Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23180 439 / 5e-150 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT4G39490 421 / 9e-143 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G21910 411 / 3e-139 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT1G65340 409 / 1e-138 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT4G39480 409 / 3e-138 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT5G52320 396 / 1e-133 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1) AT4G32170 394 / 2e-132 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT1G47620 386 / 2e-129 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT1G57750 383 / 2e-128 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT4G39510 379 / 1e-126 CYP96A12 "cytochrome P450, family 96, subfamily A, polypeptide 12", cytochrome P450, family 96, subfamily A, polypeptide 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002527 [exp] 913 / 0 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 872 / 0 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10035234 [exp] 510 / 8e-178 AT4G39490 382 / 1e-127 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10035235 [exp] 496 / 7e-172 AT4G39490 359 / 2e-118 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002525 [exp] 459 / 7e-158 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022277 [exp] 452 / 3e-155 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10028047 [exp] 436 / 2e-149 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10025677 [exp] 433 / 7e-148 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10025678 [exp] 427 / 9e-146 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064400 [exp] 481 / 1e-166 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.001G397900 [exp] 472 / 8e-163 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 446 / 1e-152 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 444 / 2e-152 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 438 / 6e-150 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G087000 [exp] 380 / 3e-128 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 369 / 5e-122 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 363 / 1e-119 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G183300 [exp] 360 / 3e-119 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.010G050100 [exp] 352 / 8e-116 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10022279 pacid=23139435 polypeptide=Lus10022279 locus=Lus10022279.g ID=Lus10022279.BGIv1.0 annot-version=v1.0 ATGTTGGTGCTGCTGCTGCTGCTAATCCTTCTCATCTTGGTGGATTACGTGGTTCGGAAGAGCAAATCTTCGATATTACCAAACTGGCCTCTGGTGGGTA TGGTTCCATCTCTACTGTGGCATGTTTCCCGCAACCTCCTACACCAGCTGGTCACCCAAGTCCTGAAACAAGAAGGAGGCTCTTTCTTATTCAAAGGTCC CATTTTTACTGATCTCAACTTCTTTATCACCTCTGATCCTGGTAACGTCCACCACATCTTCAGCCGCAACTTCGCCAATTATCCCAAGGGGGCAGAGCTG AAGGAAATAATGGAGCCATTAGGAGACGGAATATTCAACGCCGACGGCAATTCATGGAAGACACAAAGGGAAATGATCCATTCCTTAATCACCACCTCCA AATTCGAGCAGCTGATGCTCGATACCCTCCGCCGCAAGTTGGACAGTGCCCTTATCCCCATTCTCCACAACGCCTCTTCTTCATCATCAAAAACACTCGA CTTACAAGATCTCATGAAGCGATTCACATTCGACACAATCTGTCAGCTAGTTTTGGGATTCGACCCAGAATACCTATCCTTGGAACTTCCATACTTGGAT TACGCCGAGGCGTTTGATGTGATTGAGGAAGTAATCGTGTACCGCCATTGCGTTCCTCTGTGCGTGTGGAAGTTGCAGAAATGGGTCGGAATTGGGGAGG AGGCCAAGATGAAGAAGGCTTCCGAATGCTTTGGGAGGTTCTTGGATGGGAGGATTCAGGTGAAGAAAGAAGAACAGGGGAGATTTGACGATGATTTTCT AACGCAGCTCATATCGGGGACGGAACGAATTGGGGAATCCGATGATTTCTTGAAAGACGCTGCGTTTAACTTGATTGTTGCAGGGAGAGATACGATTGCT GCTGCTCTCACTTGGTTCTTCTGGCTTGTGGCTATCAATCCTGTTGTCGAGCAAAATATTTTGGAAGAGATGCATCGAGTCATTCCTGCTACTGATAGAA GCAGCAGCAGCGTTATTATTCCAAGCATGGAGGAACTGAACAGATTAGTGTATCTCCATGGAGCCATATGCGAGACTCTGCGGCTGTACCCATCAGTGCC TTTCGAACATAAGAAATCTCTAAAAGCAGATGTGCTCCCCAGTGGTCATGCCATTAGCAGCAACACGAAGATTCTGATGTCTCTTTACTCCATGGGAAGA ATGGAAGAGATATGGGGCGAGGATTGCATGGAATTCAAGCCTGAGAGATGGGTTTCACATAAAGAAGATCAGGATGGTGGAAAGATTGTTTATGTACCGT CGTACAAGTTTCCAGCATTCTTAGCAGGACCGCGGACTTGCTTGGGGAGGAAGATAGCATTCACACAGATGAAGGTTATAGCTTGCTGTGTACTGCAAAA GTTTAAGATTGAGGTGGTTGAAGGGCATCCTGTAGTTCCAGTTCCTGCAATCCTCATGTTCATGACATATGGACTCAAGATCAGAGTTTCTCAAAGGACC TTGCCTACTACTGCTTTCACTTTATGA
AA sequence Show only first row Show all	>Lus10022279 pacid=23139435 polypeptide=Lus10022279 locus=Lus10022279.g ID=Lus10022279.BGIv1.0 annot-version=v1.0 MLVLLLLLILLILVDYVVRKSKSSILPNWPLVGMVPSLLWHVSRNLLHQLVTQVLKQEGGSFLFKGPIFTDLNFFITSDPGNVHHIFSRNFANYPKGAEL KEIMEPLGDGIFNADGNSWKTQREMIHSLITTSKFEQLMLDTLRRKLDSALIPILHNASSSSSKTLDLQDLMKRFTFDTICQLVLGFDPEYLSLELPYLD YAEAFDVIEEVIVYRHCVPLCVWKLQKWVGIGEEAKMKKASECFGRFLDGRIQVKKEEQGRFDDDFLTQLISGTERIGESDDFLKDAAFNLIVAGRDTIA AALTWFFWLVAINPVVEQNILEEMHRVIPATDRSSSSVIIPSMEELNRLVYLHGAICETLRLYPSVPFEHKKSLKADVLPSGHAISSNTKILMSLYSMGR MEEIWGEDCMEFKPERWVSHKEDQDGGKIVYVPSYKFPAFLAGPRTCLGRKIAFTQMKVIACCVLQKFKIEVVEGHPVVPVPAILMFMTYGLKIRVSQRT LPTTAFTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10022279 [exp]	0	1
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	2.2	0.9188
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	6.2	0.8645
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	7.6	0.9002
					Lus10004199 [exp]	11.7	0.8335
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10018086 [exp]	16.5	0.8337
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	16.6	0.8576
AT2G41220		GLU2	glutamate synthase 2 (.1)		Lus10003820 [exp]	17.3	0.8453
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	19.0	0.8626
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10038031 [exp]	19.4	0.8582
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	24.5	0.8394

Compare expression of checked genes

Lus10022279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.