Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27550 424 / 2e-143 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G25440 122 / 3e-30 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT2G28480 106 / 9e-25 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G13070 103 / 6e-24 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G23070 84 / 1e-16 ATCFM3A CRM family member 3A (.1) AT3G01370 83 / 3e-16 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G18390 79 / 3e-15 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 78 / 7e-15 ATCFM3B CRM family member 3B (.1) AT4G29750 76 / 4e-14 CRS1 / YhbY (CRM) domain-containing protein (.1) AT5G16180 59 / 5e-09 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003667 [exp] 783 / 0 AT3G27550 481 / 9e-165 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10009566 [exp] 139 / 1e-35 AT3G25440 431 / 4e-149 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10020391 [exp] 135 / 3e-34 AT3G25440 427 / 1e-147 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10041459 [exp] 108 / 2e-25 AT2G28480 417 / 3e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10034313 [exp] 108 / 3e-25 AT2G28480 416 / 4e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10040896 [exp] 103 / 9e-24 AT4G13070 336 / 2e-114 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10022091 [exp] 87 / 1e-17 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10009031 [exp] 83 / 3e-16 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 82 / 4e-16 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343700 [exp] 473 / 2e-160 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.014G176900 [exp] 119 / 1e-28 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 115 / 6e-28 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.007G129600 [exp] 108 / 2e-25 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.010G077100 [exp] 84 / 9e-17 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 81 / 1e-15 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.006G148901 [exp] 77 / 4e-15 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.012G056100 [exp] 75 / 6e-14 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.017G116700 [exp] 69 / 7e-12 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.014G074400 [exp] 47 / 4e-05 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10022280 pacid=23139371 polypeptide=Lus10022280 locus=Lus10022280.g ID=Lus10022280.BGIv1.0 annot-version=v1.0 ATGTTGGCTTCAAGGATCCTTCGAACTAATTGCTTTAGAACACTATCTACTATCCACCTCTCCAATCCCTCCAGAAATTTGGTGGCTTTGAAAGATGTTA GCTCTACGAACAAGTCCGGCCCAGCAGGCATTGTTGTGAGAGAAGAGTCGCCTCTTTTTCCGCCGTTAAATAGCCATCCTTTGGCGGGATGGCGCCGTGG AATGTCTACTTCGAAAGGGAGGAGCATGAGAAGCAAAGTGGAGAAGAGGATGAGGAAAGAGTCTGGCAAAACCATGAGGGAGATTAGGAGAGCTAAGAAG TTGAAGAAGAAACTCATGACTGATGAGGAGAGACTTATTCACAATCTTAAAAAGGCTAAGAAGAAAGTGGCACTTCTCCTACAAAAGCTCAAGAAGTATG AGCTGCCCGAGTTGCCACCATCGCTGCATGATCCTGAGCTATTCACACCTGAGCAGCTTCAGGCGTTTAAGAAGATAGGCTTCAAGAATAAAAATTATGT CCCTGTTGGTGTTCGTGGAGTGTTTGGAGGAGTTGTGCAGAATATGCACATGCATTGGAAATTCCACGAGACTGTGCAGGTGTGTTGTGACAACTTTCCA AAGGAAAAAATCAAGGAGATGGCCACCATGATAGCAAGACTTAGCGGGGGGATTGTGGTGAATATTCATAATGTGAAGACAATTATCATGTTTCGTGGCA GAAACTATCGTCAACCGAAGAACTTGATTCCCTTTAACACCCTAACAAAGAGGAAGGCATTATTTAAGGCCAGATTTGAGCAGGCCCTTGAATCACAGAA GCTAAACATCAAGAAGACAGAGCAACAGCTTCGGCGAATGGGTCTGAACCCTGAGGATCCAGTAGCCATGGCTAGCATCCAGAGAGTGGCTTCCACTTTC TTTAATGCTATTGATAGCAAAGAAGGAAGTCCTTACGTGTTTAAAGGTGATGAAATCTCATTACAAGAGCCTGCTAATGACGCGGAGGATTCGGAATCCT CAACTGACAGTGACCAGGATGAGCTAGACAGATTTATATCTGAGATAGAGGATGCTGCAGATCAAGAATGGGCTGCAGAAGAAGCGGCAGAGCAAGAAGA ATTCGGTAGGATTAGGTATCTGAACAAAGCCGATTTCGGTGGGAGGATAAGAAGATCAGACATGTATCCTAATAATGAAGCCTTCGACGATGATAATAGG CGAGAGAGGCGATGGCAAGATGGACACATTGATCGCAAGAGTGGCAGCCGTGATGATGAGAGTAGCATATCTGATGAAGACGGTCAGTGTGATTCTGATG ATTCCGAAGATGCTAATGATCATGGTAGATCTAGGCCATTGCTAGGGAAACAAGAACGGAGTAGTCCACATTATAGTAATGATCGTTTCACTAGAAGACC TGCAATTACACAAAGACCAAGGGATCCTGAAGAAGATTCTGAATCCGAAGACATGTTGAGCGATCTTGACAACACAATGTGGGATTCAGATGAGGAAGAT AAAAGTAGAGCACCAAAGAAGGAGATTAGAGATACTGGAGCTGATATCAGAGATTCCGCATCAGAAGAAGATGATGCATTGAGCGATCCCGAAGTTCCAA TGTGGTCATCAGGCTCTGAAGATGACTTGAGTGAAAACAGAGGCAGAAAATTCGATTTTGGTCACAAGGATGATGAAAATGAGAGTGATGAGAAACAAGG GGGCAAGAGGGTAAAGTCAGCAAAAGAAGTAGATGAAACTTGGGACAGTGACTAG
AA sequence Show only first row Show all	>Lus10022280 pacid=23139371 polypeptide=Lus10022280 locus=Lus10022280.g ID=Lus10022280.BGIv1.0 annot-version=v1.0 MLASRILRTNCFRTLSTIHLSNPSRNLVALKDVSSTNKSGPAGIVVREESPLFPPLNSHPLAGWRRGMSTSKGRSMRSKVEKRMRKESGKTMREIRRAKK LKKKLMTDEERLIHNLKKAKKKVALLLQKLKKYELPELPPSLHDPELFTPEQLQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFP KEKIKEMATMIARLSGGIVVNIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGLNPEDPVAMASIQRVASTF FNAIDSKEGSPYVFKGDEISLQEPANDAEDSESSTDSDQDELDRFISEIEDAADQEWAAEEAAEQEEFGRIRYLNKADFGGRIRRSDMYPNNEAFDDDNR RERRWQDGHIDRKSGSRDDESSISDEDGQCDSDDSEDANDHGRSRPLLGKQERSSPHYSNDRFTRRPAITQRPRDPEEDSESEDMLSDLDNTMWDSDEED KSRAPKKEIRDTGADIRDSASEEDDALSDPEVPMWSSGSEDDLSENRGRKFDFGHKDDENESDEKQGGKRVKSAKEVDETWDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	0	1
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	2.0	0.9382
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	5.3	0.9163
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	7.2	0.9104
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Lus10028190 [exp]	7.4	0.8920
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	9.7	0.9012
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	10.2	0.9120
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	10.6	0.8932
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	11.2	0.8955
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	12.7	0.8770
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	13.0	0.8899

Compare expression of checked genes

Lus10022280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.