Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27540 659 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT5G14480 631 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G01620 617 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G12990 615 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G67880 593 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT2G13290 409 / 2e-142 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) AT3G26445 110 / 2e-29 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003666 [exp] 758 / 0 AT3G27540 670 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10032088 [exp] 717 / 0 AT3G27540 676 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10035231 [exp] 713 / 0 AT3G27540 672 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10006474 [exp] 611 / 0 AT1G12990 657 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10006475 [exp] 596 / 0 AT1G12990 654 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10019400 [exp] 422 / 1e-147 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10038093 [exp] 421 / 5e-147 AT2G13290 533 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10043257 [exp] 420 / 9e-147 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10000322 [exp] 0 / 1 AT1G12990 63 / 4e-23 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343600 [exp] 637 / 0 AT3G27540 627 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.008G186000 [exp] 610 / 0 AT1G12990 691 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.010G046900 [exp] 604 / 0 AT1G12990 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.018G127900 [exp] 419 / 3e-146 AT2G13290 530 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G066700 [exp] 412 / 7e-144 AT2G13290 526 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04724 [flax] [poplar] Glyco_transf_17 Glycosyltransferase family 17
Representative CDS sequence Show only first row Show all	>Lus10022281 pacid=23139385 polypeptide=Lus10022281 locus=Lus10022281.g ID=Lus10022281.BGIv1.0 annot-version=v1.0 ATGGCTGAAGGGTATTACAGTTCCAAGAAAACTGATGATATTTGCGAGAGCGTTTGCGGCCAGTCTCCAAGAGGACCTTTCAGCATGTCGAGATTAAAGT GTATATTGCGAGGGTTCGACTTCAAGACCTATTTGTTTTTTTTCATAACTATCCCATTGATTATCTTTGGAGTTTATGTGCATGGGCAGAAAGTCACCTA TTTCCTGAGGCCACTGTGGGAGAGACCTCCAAAGCCATTCAACATCATTCCTCATTACTATAATGAGAATGTGACGACTGAGACACTTTGTAAGCTTCAT GGATGGGGAGTTCGGGAGTCCCCGAGACGAGTTTACGATGCTGTGTTGTTCAGCAACGAAGTTGACATTCTTACCATTCGGTGGAATGAATTGTATCCCT ACATTACACAGTTTGTGCTTCTCGAGTCGAACTCCACTTTTACAGGATTGTCTAAGCCACTGATCTTTGCCAGCAATAAGGATAAGTTTAAATTTATAGA GCCTCGGTTGACTTACGGGATGATTGGAGGACGGTTTAAGAAGGGCGAAAATCCATTTGTGGAGGAAGCGTATCAGAGAGTAGCACTGGATCAGCTGATT AGAATAGCTGGTATAGAAGATGATGATTTGCTGATAATGTCGGATGTGGATGAGATTCCCAGTGCCCACACGATTAATCTTCTGCGATGGTGCGAGGACA TTCCTCCTATCCTTCACCTTCAGTTGAGGAACTACTTGTACTCCTTTGAGTATTTTGTGGATAGCAAGAGCTGGAGAGCATCGATTCATCGGTACCAGAC AGGGAGCACTAGATATGCACATTTCCGTCGATCGGATGTCCTGCTAGCTGATTCAGGGTGGCATTGCAGTTTCTGCTTCCGATATATAAATGACTTCATA TTTAAGATGAAAGCATACAGCCATTATGACCGGGTGAGGTTCTCCCACTACTTGGATCCAAAAAGAGTTCAGGATGTAATATGCAAGGGGGCTGACTTGT TTGACATGCTCCCTGAGGAGTATACATTCAAGGAGATCATCGGCAAGATGGGGCTTATACGACGCTCATTCTCGGCAGTTCACCTTCCTGCGTTCTTGTT GAATAACGCTGAGAAGTATAAATATCTCTTACCTGGTAACTGCAGGAGAGAAAGTGAGTGA
AA sequence Show only first row Show all	>Lus10022281 pacid=23139385 polypeptide=Lus10022281 locus=Lus10022281.g ID=Lus10022281.BGIv1.0 annot-version=v1.0 MAEGYYSSKKTDDICESVCGQSPRGPFSMSRLKCILRGFDFKTYLFFFITIPLIIFGVYVHGQKVTYFLRPLWERPPKPFNIIPHYYNENVTTETLCKLH GWGVRESPRRVYDAVLFSNEVDILTIRWNELYPYITQFVLLESNSTFTGLSKPLIFASNKDKFKFIEPRLTYGMIGGRFKKGENPFVEEAYQRVALDQLI RIAGIEDDDLLIMSDVDEIPSAHTINLLRWCEDIPPILHLQLRNYLYSFEYFVDSKSWRASIHRYQTGSTRYAHFRRSDVLLADSGWHCSFCFRYINDFI FKMKAYSHYDRVRFSHYLDPKRVQDVICKGADLFDMLPEEYTFKEIIGKMGLIRRSFSAVHLPAFLLNNAEKYKYLLPGNCRRESE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10022281 [exp]	0	1
AT4G24200			Transcription elongation facto...		Lus10017630 [exp]	1.4	0.8856
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10003666 [exp]	1.4	0.8947
AT3G24530			AAA-type ATPase family protein...		Lus10034913 [exp]	2.8	0.8749
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	3.5	0.8583
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10034274 [exp]	4.5	0.8599
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	6.5	0.8797
AT5G60750			CAAX amino terminal protease f...		Lus10032326 [exp]	7.0	0.8654
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	7.7	0.8743
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	9.8	0.8629
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	10.4	0.8333

Compare expression of checked genes

Lus10022281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.