Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01640 575 / 0 ATGLCAK ARABIDOPSIS THALIANA GLUCURONOKINASE, glucuronokinase G (.1) AT5G14470 555 / 0 GHMP kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003665 [exp] 706 / 0 AT3G01640 573 / 0.0 ARABIDOPSIS THALIANA GLUCURONOKINASE, glucuronokinase G (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343400 [exp] 576 / 0 AT3G01640 585 / 0.0 ARABIDOPSIS THALIANA GLUCURONOKINASE, glucuronokinase G (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022282 pacid=23139439 polypeptide=Lus10022282 locus=Lus10022282.g ID=Lus10022282.BGIv1.0 annot-version=v1.0 ATGGGAGAGACGATTGAGCACAGATCTTATGCCAGAGTCGGGCTTCTTGGTAACCCAAGCGATGTTTACTTCGGACGCACCATTTCTTTCAGCCTCTCCA ATTTCTGGGCCACCGTCCTTCTCAGCCCTTCCGATGATCTCGTCATCACTCCTCATCCTAAGCACGATCTTGTCAATTTCTCCTCCCTCGATCACCTGGT GAATCGGCTGCAGAGTGAAGGTTACTATGGAGGGGTCAGGCTGCTGATGGCGATCTGTAAAGTTTTCTACAATTACTGTAGGGAGAACAAGATTCAGCTT CATCAGCGCAAGTTTGCTCTTTCCTACGACACCAATATTCCTCGACAGGCAGGACTTTCTGGATCCAGTGCTATTGTATCTGCAGCCCTGAACTGCCTAC TTGACTTTTACAAAGTGAGGGATATGATCAAGCTTGAAATCAGGCCTAATCTAGTCCTCGGCGCAGAAAAAGAGCTTGGAATCGTTGCTGGCCTCCAAGA TCGCGTGGCACAGATATATGGGGGCCTTGTTTATATGGAATTCTCTCATGAACACATGGATAAGTTAGGACATGGGATCTACACACCCATGGACATTAAC CTTCTTCCACCACTTCACCTCGTCTATGCTGAGAACCCTAGTGATTCTGGCAAGGTGCACAGTTCAGTCAGGCAAAGATGGCTCGACGGAGACAAGTTCA TCATTACAACAATGGAAGAAGTCGCAAATATAGCATTAGAAGGGAAAACTGCTATCATGGAAAAGAACTACTCAAAACTTGCAGAGCTCATGAACCGTAA TTTTGATCTACGAAGGAGCATGTTTGGAGATGAAGTTATTGGTGCTTTAAACATAAAAATGGTGGAAACTGCACGCAAGGTGGGTGCTGCTTCAAAATTC ACGGGCAGTGGTGGTGCTGTGATTGTATTTTGTCCGAATGGGCAGTCGCAAGTAAAGCTCCTGGAGGATGAATGTCGAAAAGCTGGATTTGTAGTTGAAC CTGTGAAAATCGCCCAGTCCAATCTTTCACGAGGATGA
AA sequence Show only first row Show all	>Lus10022282 pacid=23139439 polypeptide=Lus10022282 locus=Lus10022282.g ID=Lus10022282.BGIv1.0 annot-version=v1.0 MGETIEHRSYARVGLLGNPSDVYFGRTISFSLSNFWATVLLSPSDDLVITPHPKHDLVNFSSLDHLVNRLQSEGYYGGVRLLMAICKVFYNYCRENKIQL HQRKFALSYDTNIPRQAGLSGSSAIVSAALNCLLDFYKVRDMIKLEIRPNLVLGAEKELGIVAGLQDRVAQIYGGLVYMEFSHEHMDKLGHGIYTPMDIN LLPPLHLVYAENPSDSGKVHSSVRQRWLDGDKFIITTMEEVANIALEGKTAIMEKNYSKLAELMNRNFDLRRSMFGDEVIGALNIKMVETARKVGAASKF TGSGGAVIVFCPNGQSQVKLLEDECRKAGFVVEPVKIAQSNLSRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	0	1
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	1.0	0.9850
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	2.0	0.9797
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10019299 [exp]	2.4	0.9751
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	2.8	0.9669
AT5G20950			Glycosyl hydrolase family prot...		Lus10013646 [exp]	5.7	0.9462
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015892 [exp]	6.9	0.9556
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	7.4	0.9647
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	7.7	0.9630
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10041843 [exp]	7.7	0.9577
AT1G18270			ketose-bisphosphate aldolase c...		Lus10002140 [exp]	8.7	0.9569

Compare expression of checked genes

Lus10022282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.