Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27520 100 / 2e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003664 [exp] 260 / 1e-89 AT3G27520 135 / 3e-40 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343200 [exp] 154 / 8e-48 AT3G27520 113 / 1e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022283 pacid=23139360 polypeptide=Lus10022283 locus=Lus10022283.g ID=Lus10022283.BGIv1.0 annot-version=v1.0 ATGGATTCCGCGCCCACAGCTTGGACGCCTGAGGAAGGCCAAGAGTGGGAGCTCCGCCACGACGAGGATGGATTCACTTATAAGATACTCAAGCGCCAGC GGCTCGACTTCCCCGTCCCAGATCCACCGCCTGCGGATCCGGAGGCGGAAGAGAAACGCAGGAGAGCGCGCAAGCGTGACGTGCTTTTGAAAGTGAAGAC TCGGTACCAGAAGGAGATCCAACAATGGGAACTTTTATCGAACAGCTTCCGAGCAATGGAGGAAAGAGTCAACCAACAACAGCTTCAGTCACGGGAACAA CACCAATCGTCAGACAGGACGGCTGCTCAAGGAACGGAATCGAGGGGAGTGGAAGAAGAAGATCCTTATGGGTCACTCGTCGATGAGCTCCTCTCTAAGG CGGAAGCCCAAGAGGGAATCATCCGGAACGTTTCAAACCTCTGCGATATAGCCGAAACAATTTGTAATGTTCATCAGGATTTGTTAGTACAAACTTTCAT GGACCTACCAGTTTGGTCTTCACCGCAAGAACTAATGGCATCGCTTTGTGATGACTGA
AA sequence Show only first row Show all	>Lus10022283 pacid=23139360 polypeptide=Lus10022283 locus=Lus10022283.g ID=Lus10022283.BGIv1.0 annot-version=v1.0 MDSAPTAWTPEEGQEWELRHDEDGFTYKILKRQRLDFPVPDPPPADPEAEEKRRRARKRDVLLKVKTRYQKEIQQWELLSNSFRAMEERVNQQQLQSREQ HQSSDRTAAQGTESRGVEEEDPYGSLVDELLSKAEAQEGIIRNVSNLCDIAETICNVHQDLLVQTFMDLPVWSSPQELMASLCDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27520			unknown protein		Lus10022283 [exp]	0	1
AT5G66770	GRAS		GRAS family transcription fact...		Lus10024014 [exp]	2.0	0.8197
AT3G22790			Kinase interacting (KIP1-like)...		Lus10039359 [exp]	11.0	0.8091
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10031010 [exp]	11.7	0.7876
AT2G31810			ACT domain-containing small su...		Lus10027061 [exp]	12.0	0.7535
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10033014 [exp]	15.2	0.7430
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	16.2	0.7961
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	18.6	0.8069
AT3G53540			unknown protein		Lus10024434 [exp]	21.9	0.7568
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10023592 [exp]	28.2	0.7914
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10040085 [exp]	31.9	0.7689

Compare expression of checked genes

Lus10022283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.