Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14460 526 / 0 Pseudouridine synthase family protein (.1) AT3G57150 81 / 4e-16 ATNAP57, ATCBF5, NAP57 homologue of NAP57 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003661 [exp] 678 / 0 AT5G14460 628 / 0.0 Pseudouridine synthase family protein (.1) Lus10023565 [exp] 93 / 6e-20 AT3G57150 743 / 0.0 homologue of NAP57 (.1) Lus10040451 [exp] 89 / 6e-19 AT3G57150 582 / 0.0 homologue of NAP57 (.1) Lus10035418 [exp] 63 / 2e-10 AT3G57150 647 / 0.0 homologue of NAP57 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343100 [exp] 574 / 0 AT5G14460 585 / 0.0 Pseudouridine synthase family protein (.1) Potri.006G044100 [exp] 91 / 3e-19 AT3G57150 729 / 0.0 homologue of NAP57 (.1) Potri.016G041200 [exp] 88 / 3e-18 AT3G57150 741 / 0.0 homologue of NAP57 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01509 [flax] [poplar] TruB_N TruB family pseudouridylate synthase (N terminal domain)
Representative CDS sequence Show only first row Show all	>Lus10022284 pacid=23139403 polypeptide=Lus10022284 locus=Lus10022284.g ID=Lus10022284.BGIv1.0 annot-version=v1.0 ATGGCCACTCTGAAAAACTCGCCTTCTTTCCCTTCTTCTTCTTTGTCTTCAATAATCCCCATCCTTTTCAGTCGCCATTCCCTTATCTCGCTCTCGCAAA CCCGCCTCTCCTCCAAAACCCCTTACCCTCTTCAATACGACATGATCATCAGCCGCCCCACTCAGTCTTCCATGGCCCAGCCTCGCCGCCGCCGACCATC CACCCGGCGCGCCGAACCGGACTCACCCGAAACGGAAGCAGGCGTTGTGGAGTTTCACAGGCTGCATAAGAGAGAAGAGGAGCTGTACTTCTACGACGCT TTGGCTTATCCTTGGGAGAAAGATAAGCATTACAAGATGGTTTATCAGCTGGAGAAGAAGTATTTCCCTGACCAGTGCCTTGACAAGGCGTTTCTTGATC CTAAGGACTCCAATTTGAATCAGGCCAAAAGGAGTGTTAAGACTAGGGTTAAAAGAGATGAGCATGTTGAAGGAGACAAAAATCTCTTGTTTTTCGAAGA GGGGGATGATAAGAAGGGTGAGGTAGTGGAGGATGATGTTGTCACGCACAAGAAAGTAGCAGATTTCTTCAAGGTTTTGAAGAAGGGTTCTTCTGGAGCA AAGGTGGTTGAAGTTGGGAATGGTGGTGGAGAGCCATTCCTTGCTACTAGGACTACCGGACTTCCTCCAACCTGGGATGGTCCTTATGGCACAGTGGTCT TGGTCAACAAGCCTAAAGGGTGGACTTCATTTACCGTTTGTGGGAAGCTTCGTCGCCTGGTCAAAGTGAAAAAGGTTGGGCATGCTGGAACACTTGATCC AATGGCGACAGGTTTGTTGATTGTCTGTGTTGGGAAGTCTACTAAGATTGTAGATAGCTATCAGGGCATGGTCAAAGGTTATAGTGGAGTTTTTCGTCTA GGGGAAGCTACTTCAACTTGGGATGCCGATTCCCCAGTCATCCAGCGTGAGCCTTGGGAGCACATTAAAGAGAACGACATAAAGAAAGCTGCTGCATCTT TTGTTGGAGAGATATGGCAAGTTCCTCCGATGTTCTCAGCGATCAAAGTTGGAGGTGAGAAAATGTATGATAAAGCAAGAAGAGGAGAAAGCGTTGAGCT TGCACCCAGGAGAATTTCCATCTTCCAGTTTGACATTGAACGTAGCCTGGAGGACAGACAAAATCTGATATTCCGGGTGACATGCTCAAAAGGAACGTAC ATTCGGTCGTTATGTGCAGATCTTGGGAAGGCTCTCGGCAGTTGTGCTCATTTAAGTGCACTTCGAAGAGATTCAATAGGAGAATATTCGGCAGATGATG CGTGGGAGTTTAAAGAGCTGGAAGATGCTATTGCTAAATCATACTTTTAA
AA sequence Show only first row Show all	>Lus10022284 pacid=23139403 polypeptide=Lus10022284 locus=Lus10022284.g ID=Lus10022284.BGIv1.0 annot-version=v1.0 MATLKNSPSFPSSSLSSIIPILFSRHSLISLSQTRLSSKTPYPLQYDMIISRPTQSSMAQPRRRRPSTRRAEPDSPETEAGVVEFHRLHKREEELYFYDA LAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPKDSNLNQAKRSVKTRVKRDEHVEGDKNLLFFEEGDDKKGEVVEDDVVTHKKVADFFKVLKKGSSGA KVVEVGNGGGEPFLATRTTGLPPTWDGPYGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKIVDSYQGMVKGYSGVFRL GEATSTWDADSPVIQREPWEHIKENDIKKAAASFVGEIWQVPPMFSAIKVGGEKMYDKARRGESVELAPRRISIFQFDIERSLEDRQNLIFRVTCSKGTY IRSLCADLGKALGSCAHLSALRRDSIGEYSADDAWEFKELEDAIAKSYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14460			Pseudouridine synthase family ...		Lus10022284 [exp]	0	1
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	15.5	0.8064
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10038975 [exp]	16.6	0.8011
AT2G36200			P-loop containing nucleoside t...		Lus10022694 [exp]	20.4	0.7686
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10041548 [exp]	22.4	0.7793
AT2G38330			MATE efflux family protein (.1...		Lus10002856 [exp]	26.9	0.7942
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	29.5	0.7691
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001758 [exp]	29.7	0.7990
AT4G16360			5'-AMP-activated protein kinas...		Lus10012343 [exp]	36.3	0.7874
AT5G48500			unknown protein		Lus10009584 [exp]	38.0	0.7849
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	41.0	0.7876

Compare expression of checked genes

Lus10022284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.