Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22060 119 / 3e-32 Receptor-like protein kinase-related family protein (.1) AT4G38830 96 / 6e-22 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G21410 95 / 7e-22 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23170 92 / 8e-22 CRK9, EP1 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 9, receptor-like protein kinase-related family protein (.1) AT4G23150 90 / 6e-20 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23280 88 / 2e-19 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G05200 87 / 4e-19 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT5G48540 84 / 9e-19 receptor-like protein kinase-related family protein (.1) AT4G21400 84 / 4e-18 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT1G61750 83 / 4e-18 Receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 191 / 3e-56 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 164 / 7e-46 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10026629 [exp] 159 / 2e-44 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018379 [exp] 157 / 9e-44 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018380 [exp] 146 / 6e-41 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10003660 [exp] 135 / 9e-38 AT4G05200 117 / 3e-29 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007634 [exp] 137 / 1e-36 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10007633 [exp] 124 / 5e-32 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007635 [exp] 108 / 2e-26 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 139 / 2e-37 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028700 [exp] 125 / 3e-32 AT4G21410 460 / 4e-152 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.007G120700 [exp] 118 / 5e-32 AT3G22060 275 / 2e-93 Receptor-like protein kinase-related family protein (.1) Potri.007G120500 [exp] 118 / 5e-32 AT3G22060 278 / 6e-95 Receptor-like protein kinase-related family protein (.1) Potri.011G029000 [exp] 124 / 8e-32 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 121 / 7e-31 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.017G040450 [exp] 115 / 1e-30 AT3G22060 274 / 4e-93 Receptor-like protein kinase-related family protein (.1) Potri.007G120501 [exp] 114 / 1e-30 AT3G22060 271 / 4e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120401 [exp] 114 / 2e-30 AT3G22060 271 / 3e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120400 [exp] 112 / 9e-30 AT3G22060 270 / 8e-92 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10022286 pacid=23139433 polypeptide=Lus10022286 locus=Lus10022286.g ID=Lus10022286.BGIv1.0 annot-version=v1.0 ATGAATCCCCTCTTCCTTCCTCTCCTTCTCCTTACTCTACCTTCTTACACAAATCCCCAGCCGGCGGATTTCGTAGTTTATTTTTGCTCCAACAACGTCG GAAACTACACAGCCGGCAGCACATATGAAAGAAATCTAAACAACCTACTGATGACCTCGATAGCCGCAGGCAACACAACCAGCGCCGGCTTCTACTACTC GTCGTTCGGACGAGGCTCCGACTGGGTCAACGGACTCGGCCTATGCTCAGGCAACGTCAGTCCGGATGACTGCAGTACCTGCATAAAAGATGCCACCCGC CGTATTCTGGTGGATTGCCCCCTCGAGAAGGAGGCCGTCGGGTGGTACGACTTCTGTATGATCCAGTTTTCGAACTGGACCATCTACGGGGTACTCAACC CCAACCCTATCACTTTCTACCTGTGGAACGTGGAAACTGCTTCCAGCCCCAACACATTTAACTCTTCACTTTATACCCTGTTGACTCGGCTGAGGAAAAC GGCCGTGGCTTCCGGCGTCAGGAAATTCGCTACCGGAATGGAGCGAGTCGGAACAGCTTTGACGATCTATGGACTCGTGCAGTGGTACGACGATATCACC GCCGTCTCCGCCGGTTTCTTCTCCGCCTCCGTTCCCTGCAGGAACTCTACCAAATGGGCAAGACATAGCAGTGAAGAGGTAGGCGAAAGATTCAGGGCAA GGAGACGTGGAGTTCAAGAACGAAGTAATGCTGGTGGCCAATCTTCAGCATCAGAACTTAGTGAGGCTTCTTGGTTTCTCTCTACAAGGACGGGAGAGAC TTCTTATCTACGAGTTTATTCCCAATGCTAG
AA sequence Show only first row Show all	>Lus10022286 pacid=23139433 polypeptide=Lus10022286 locus=Lus10022286.g ID=Lus10022286.BGIv1.0 annot-version=v1.0 MNPLFLPLLLLTLPSYTNPQPADFVVYFCSNNVGNYTAGSTYERNLNNLLMTSIAAGNTTSAGFYYSSFGRGSDWVNGLGLCSGNVSPDDCSTCIKDATR RILVDCPLEKEAVGWYDFCMIQFSNWTIYGVLNPNPITFYLWNVETASSPNTFNSSLYTLLTRLRKTAVASGVRKFATGMERVGTALTIYGLVQWYDDIT AVSAGFFSASVPCRNSTKWARHSSEEVGERFRARRRGVQERSNAGGQSSASELSEASWFLSTRTGETSYLRVYSQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22060			Receptor-like protein kinase-r...		Lus10022286 [exp]	0	1
AT1G63060			unknown protein		Lus10001796 [exp]	1.7	0.9125
AT1G63060			unknown protein		Lus10002567 [exp]	2.4	0.9125
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012691 [exp]	2.8	0.8351
					Lus10041320 [exp]	4.9	0.8428
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	5.5	0.8044
AT4G29035			Plant self-incompatibility pro...		Lus10019767 [exp]	7.0	0.7802
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018523 [exp]	7.5	0.7663
					Lus10030519 [exp]	10.0	0.7095
					Lus10033730 [exp]	12.5	0.7813
AT5G59845			Gibberellin-regulated family p...		Lus10018708 [exp]	14.0	0.6700

Compare expression of checked genes

Lus10022286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.