Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27470 511 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G67850 491 / 2e-173 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G13000 473 / 2e-166 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 468 / 6e-165 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G08040 467 / 2e-164 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G26440 457 / 4e-160 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G24570 436 / 7e-152 Protein of unknown function (DUF707) (.1) AT4G12840 280 / 9e-91 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 250 / 3e-79 Protein of unknown function (DUF707) (.1) AT1G11170 244 / 3e-76 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003659 [exp] 681 / 0 AT3G27470 563 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10032090 [exp] 598 / 0 AT3G27470 564 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006472 [exp] 497 / 6e-176 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10011414 [exp] 497 / 9e-176 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10035229 [exp] 475 / 5e-168 AT1G67850 452 / 1e-159 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10041316 [exp] 468 / 5e-164 AT2G28310 590 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10016095 [exp] 464 / 6e-163 AT2G28310 604 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10021463 [exp] 464 / 1e-162 AT2G28310 594 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10037396 [exp] 469 / 2e-153 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G065200 [exp] 551 / 0 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.010G047200 [exp] 507 / 1e-179 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.008G185600 [exp] 500 / 4e-177 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.009G011000 [exp] 462 / 2e-162 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.014G175800 [exp] 268 / 3e-86 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.019G053000 [exp] 262 / 7e-84 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.011G045300 [exp] 254 / 2e-80 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G227700 [exp] 250 / 2e-79 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.004G036800 [exp] 248 / 3e-78 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.003G003100 [exp] 247 / 5e-78 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10022287 pacid=23139363 polypeptide=Lus10022287 locus=Lus10022287.g ID=Lus10022287.BGIv1.0 annot-version=v1.0 ATGATGAAGCTTTTCATAACAACTTTCCTTGGACTTATCTTTGGCTTCTTCCTGGGAGTATCCTTACCAACATTGTTCCTGTCAAAGATGAATCTTCCAT CTGGTTTGTTTCCTTCCTTTGACATCACTTATATGGAGGATAAGTATTCTGCTATTTCACCACACGCACTGCTCAATGCTTTGTCCTCATTGGGGGGCCA TAGCTCAAACTCCTTGCCGTTTCACAGACACAATCGAACCGAGATATGGGTCAATGACAACCCTCGGGGTGCGCAGAGGTTGCCCCCTGGCATAGTAGTT TCTGAATCCGACTTGTATCCCCGACGATTGTGGGGTGCCCCCGACAAGGACTTGGCCATCAAACAGAAGTATCTTGTCACATTTACTGTTGGTTATGATC AGAAAAAAAATATCAATGCAGCAGTTCAAAAGTTTTCTGAGAACTTCACCGTCCTATTGTTTCACTATGATGGCCGGACAACCGAATGGGATGAGTTTGA GTGGTCAAAACGAGCAATCCATGTGAGTGCTCAGAAACAAACCAAGTGGTGGTTCGCCAAGCGTTTCCTGCATCCTGATATTGTTGCACCATACGACTAT ATTTTCATATGGGATGAAGATCTTGGCTTGGAGCATTTCGATGCCGAGGAATACATTAAACTGGTAAAGAAGCATACTTTGGAAATTTCTCAGCCTGCTT TAGACCCCGAGAGAGGAACAACCTGGGTCATGACCAAGAGAAGAAATGACACAGAAGTTCACAAAAATGCCGAAGAAAAGCCTGGTTGGTGCAAGGAACC ATATTTGCCACCCTGTTCATCATTTGTGGAGATTATGGCGCCAGTATTTTCCCGAGATGCATGGCGCTGTGCTTGGCATATGATTCAGAACGACTTGGTT CATGGATGGGGTCTTGACTTTTCTATGAGGAACTGTGTTGAGCCTGCTCACGAGAGGATAGGAGTCGTAGATGCTCAATGGATTGTTCATTTAGGCGTCC CCTCACTCGGGAACCAGGGAAAAGCAGAGAATGGGAAAGCACCGTGGCAAGGGGTAAGAAAAGACTCACTCTTTTTGTGCACCTTGAGGCTGGTTTTCTG GGATTGGGAAGTAATCCTTGTTGAATATGGATTGGACGTGGTGCCTAGTGTATTGCAATCATTGTGTTTGTTTGTTGGACAGGTGAGGGAGAGGTGTGAA AAGGAATGGAAAATGTTTTATGATCGCATCTCCCAAGCACAGAAAGCCTATTTCTTGATGCTCAAATTTAGTGCAGGAAGTAATGTAACCGACAGCTAG
AA sequence Show only first row Show all	>Lus10022287 pacid=23139363 polypeptide=Lus10022287 locus=Lus10022287.g ID=Lus10022287.BGIv1.0 annot-version=v1.0 MMKLFITTFLGLIFGFFLGVSLPTLFLSKMNLPSGLFPSFDITYMEDKYSAISPHALLNALSSLGGHSSNSLPFHRHNRTEIWVNDNPRGAQRLPPGIVV SESDLYPRRLWGAPDKDLAIKQKYLVTFTVGYDQKKNINAAVQKFSENFTVLLFHYDGRTTEWDEFEWSKRAIHVSAQKQTKWWFAKRFLHPDIVAPYDY IFIWDEDLGLEHFDAEEYIKLVKKHTLEISQPALDPERGTTWVMTKRRNDTEVHKNAEEKPGWCKEPYLPPCSSFVEIMAPVFSRDAWRCAWHMIQNDLV HGWGLDFSMRNCVEPAHERIGVVDAQWIVHLGVPSLGNQGKAENGKAPWQGVRKDSLFLCTLRLVFWDWEVILVEYGLDVVPSVLQSLCLFVGQVRERCE KEWKMFYDRISQAQKAYFLMLKFSAGSNVTDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27470			Protein of unknown function (D...		Lus10022287 [exp]	0	1
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10000659 [exp]	5.3	0.8479
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10020786 [exp]	14.3	0.8412
AT3G45400			exostosin family protein (.1)		Lus10020308 [exp]	14.9	0.7590
					Lus10039897 [exp]	15.6	0.8374
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	18.0	0.7793
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	18.3	0.7426
					Lus10011453 [exp]	20.4	0.8308
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016130 [exp]	20.6	0.8366
AT2G34930			disease resistance family prot...		Lus10039514 [exp]	21.8	0.6079
					Lus10034724 [exp]	22.5	0.7637

Compare expression of checked genes

Lus10022287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.