Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40570 179 / 9e-56 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2) AT5G14440 180 / 3e-55 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003658 [exp] 351 / 9e-123 AT5G40570 211 / 6e-69 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342400 [exp] 253 / 3e-84 AT5G40570 197 / 2e-63 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0131 [flax] [poplar] DoxD-like PF05477 [flax] [poplar] SURF2 Surfeit locus protein 2 (SURF2)
Representative CDS sequence Show only first row Show all	>Lus10022288 pacid=23139454 polypeptide=Lus10022288 locus=Lus10022288.g ID=Lus10022288.BGIv1.0 annot-version=v1.0 ATGGGCGGTTATCAACCGTTCGCCCGACTCCCTTGTCTACCTCAAACCGCACCGTATCTTCATCACGCTGTAGTTGGATTGGGTACCCAAAACTTCCTGG AACGTCGGCGGCAGGCAGCAGCAGTAATGGCGGAAAAAGAAGAGATGACCGGGAAAGAAGGGGAGAACCTGCTTGGTTCGCCTTCATTCTCTGAGCTCGA AAACGGAAGGTTCAAGTGCGTTGAGACGGGGCATGAAGTTCTGGACAAAGACAAGGAATCTTATTCGCAAAGCAAAAAGTGCCGTTTGGGGCTCATCGAT CATGCTCTCTCCAACAAGAAACCTCCTCTCAACATGTTTAAGCAGGACCCTCTCAACAGGTCCAAGTTGGTTTGTAAGTTGACTGGGGACACAGTGAATA AGTCCGAGGAGCATATCTGGAAGCACATCAACGGCAGGCGATTCCTCAACAAATTAGAGGAAAAAGAAACTGGAAAAGTGGTTCCGAATGGAAAAGCAGC AGAAGAAAAGGAAAAGAAGGGAGAAGGAGATGAGGATGGCAATGAGAAGGAGGAAAAGAAGAGGAAAAAGAAGAAGAAGAAGAAAAAGAAGGCCAAGAGT GTTGAGGAAATTGTTACCGAGATGAGGGATACTCCTGATGGCGATGGGGAGACTGAATCCGAGGAAGCTGATTTCTGGGTACCCCCTGTTGGTGACCGTT GGGATTTTGATGATGGAGCCGGTCGCTGGAGTTCTGATGACGAAGAACTGGAAGCAGATGATGCAGTTGAAGATGTTAGCAAAGAGTCCGAGGATCTCTC TACCCGGACGAAGAGAATGTCCATTGAAATAGGGCCGAGCAGTCATGCATCCAGAAAGAAGAAGAGTAAAAAGAACCCTAAACCCTAG
AA sequence Show only first row Show all	>Lus10022288 pacid=23139454 polypeptide=Lus10022288 locus=Lus10022288.g ID=Lus10022288.BGIv1.0 annot-version=v1.0 MGGYQPFARLPCLPQTAPYLHHAVVGLGTQNFLERRRQAAAVMAEKEEMTGKEGENLLGSPSFSELENGRFKCVETGHEVLDKDKESYSQSKKCRLGLID HALSNKKPPLNMFKQDPLNRSKLVCKLTGDTVNKSEEHIWKHINGRRFLNKLEEKETGKVVPNGKAAEEKEKKGEGDEDGNEKEEKKRKKKKKKKKKAKS VEEIVTEMRDTPDGDGETESEEADFWVPPVGDRWDFDDGAGRWSSDDEELEADDAVEDVSKESEDLSTRTKRMSIEIGPSSHASRKKKSKKNPKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	0	1
AT1G31870			unknown protein		Lus10033140 [exp]	1.4	0.9211
AT5G53800			unknown protein		Lus10014800 [exp]	1.4	0.9416
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10034688 [exp]	1.7	0.9169
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	2.8	0.9142
AT5G53800			unknown protein		Lus10003591 [exp]	4.5	0.9110
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10013376 [exp]	5.5	0.8800
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10010326 [exp]	6.5	0.8936
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	6.9	0.8785
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	8.8	0.8800
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029220 [exp]	9.8	0.8918

Compare expression of checked genes

Lus10022288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.