Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27440 600 / 0 UKL5 uridine kinase-like 5 (.1) AT4G26510 573 / 0 UKL4 uridine kinase-like 4 (.1.2) AT1G55810 569 / 0 UKL3 uridine kinase-like 3 (.1.2.3) AT3G27190 558 / 0 UKL2 uridine kinase-like 2 (.1) AT5G40870 554 / 0 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT1G32060 80 / 3e-16 PRK phosphoribulokinase (.1) AT1G26190 71 / 7e-13 Phosphoribulokinase / Uridine kinase family (.1) AT3G53900 66 / 2e-12 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) AT1G73980 66 / 2e-11 Phosphoribulokinase / Uridine kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035216 [exp] 552 / 0 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10041569 [exp] 546 / 0 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10032051 [exp] 520 / 0 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 511 / 0 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 512 / 2e-179 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10000674 [exp] 80 / 3e-16 AT1G32060 667 / 0.0 phosphoribulokinase (.1) Lus10011060 [exp] 79 / 3e-16 AT1G32060 624 / 0.0 phosphoribulokinase (.1) Lus10024350 [exp] 66 / 1e-11 AT3G53900 374 / 9e-128 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Lus10009040 [exp] 65 / 4e-11 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G071200 [exp] 637 / 0 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.001G467800 [exp] 587 / 0 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 580 / 0 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.001G332100 [exp] 561 / 0 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.017G069600 [exp] 558 / 0 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.003G099400 [exp] 81 / 2e-16 AT1G32060 690 / 0.0 phosphoribulokinase (.1) Potri.001G134000 [exp] 77 / 2e-15 AT1G32060 699 / 0.0 phosphoribulokinase (.1) Potri.006G091000 [exp] 67 / 3e-12 AT3G53900 379 / 7e-133 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Potri.015G055400 [exp] 67 / 9e-12 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G110500 [exp] 64 / 5e-11 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10022289 pacid=23139401 polypeptide=Lus10022289 locus=Lus10022289.g ID=Lus10022289.BGIv1.0 annot-version=v1.0 ATGAACGCAGTTTTTGGTGTTGTAAAGGATGCATTTTACCGGTCTCTTACACCTGAGAAACTGAAAAACGTCAAAGACTACAACTTTGATCATCCTGATG CTTTCAACACCGAGCTTCTCCTTTCGTGTATGGAGAAACTGAAGCGTGGGGAGGCTATCACCACGCCGAACTATGATTTCAAAACCCATCAAAGTGTCGG TCCTGGTTGCAAGGTTAACCCTGCAGACATTTTTATTCTGGAAGGAATCCTTGTTCTTCACGATGACCGGGTGCGTGACCTTATGAACATGAAGATTTTT GTTGATACAGATTCTGACCTACGTCTTGCCAGGAGGATTCAAAGGGACACAGTTGAGAGAGGCAGGGATGTTCAAAATGTTCTTGATCAATATGCTAAGT TTGTAAAGCCTAGCTTCGACGAGTTCATACTTCCCTCAAAGAAGTATGCGGACATTATCATTCCAAGAGGAGGAGACAATGATGTCGCCATTGATTTGAT CGTACAACATATCCGTACAAAGCTTGGACAGCATGATCTCTGTAAAATATATCCAAACCTTTTGGTCATATATTCAACATTCCAGATTCGCGGCATGCAC ACCCTTGTACGAGATGTGCAAACGACAAAGCACGATTTTGTGTTCTATGCAGACCGCCTAATTCGTTTGGTGGTGGAGTATGGTCTTGGTCACCTGCCAT TTACCGAAAAACAGATCAGAACTCCAACCGGATCTATATACCCTGGAGTAGTTTTCTGCAAAAGCGGGGAGAGCATGGAGAATGCACTTAGAGCATGTTG CAAGGGAATTAAAATCGGCAAAATTCTCATCCATGGAGAGCGTAATGATGGCAGGGAGTTGATATATGAGAAGCTACCTTCAGACATCGCTAGCCACCAT GTCTTGTTGCTCGATCCTGTTCTGGCTTCAGGGAACTCTGCAGTCAAAGCTATGTCCGTGCTGCTGAGTAAAGGTGTTCCAGAATCCAATATTATTTTCC TGAACCTGATAGCAGCACCACAAGGAATACATGTGGTTTGCAAGAAATTCCCTAAGCTCAAGGTCGTGACATCAGAGATTGACGAGACATTGGATGAAGA TTTACGTGTGATTCCAGGCATGGGAGAGTTCAGCGACCGCTATTTTGGCACGGATTGA
AA sequence Show only first row Show all	>Lus10022289 pacid=23139401 polypeptide=Lus10022289 locus=Lus10022289.g ID=Lus10022289.BGIv1.0 annot-version=v1.0 MNAVFGVVKDAFYRSLTPEKLKNVKDYNFDHPDAFNTELLLSCMEKLKRGEAITTPNYDFKTHQSVGPGCKVNPADIFILEGILVLHDDRVRDLMNMKIF VDTDSDLRLARRIQRDTVERGRDVQNVLDQYAKFVKPSFDEFILPSKKYADIIIPRGGDNDVAIDLIVQHIRTKLGQHDLCKIYPNLLVIYSTFQIRGMH TLVRDVQTTKHDFVFYADRLIRLVVEYGLGHLPFTEKQIRTPTGSIYPGVVFCKSGESMENALRACCKGIKIGKILIHGERNDGRELIYEKLPSDIASHH VLLLDPVLASGNSAVKAMSVLLSKGVPESNIIFLNLIAAPQGIHVVCKKFPKLKVVTSEIDETLDEDLRVIPGMGEFSDRYFGTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	0	1
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	3.5	0.9515
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10039860 [exp]	4.6	0.8837
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	4.7	0.9475
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	5.2	0.9471
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	6.3	0.9444
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042025 [exp]	6.6	0.8821
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	6.7	0.9441
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	8.0	0.9297
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	8.1	0.9409
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	9.9	0.9354

Compare expression of checked genes

Lus10022289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.