Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31400 887 / 0 GUN1 genomes uncoupled 1 (.1) AT1G74850 263 / 2e-76 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G02860 251 / 3e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 223 / 1e-62 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18900 209 / 2e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G12620 202 / 3e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 198 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 200 / 3e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 196 / 9e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12700 194 / 1e-52 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003657 [exp] 1397 / 0 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10033127 [exp] 268 / 3e-78 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10013894 [exp] 245 / 1e-69 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 241 / 5e-69 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042068 [exp] 203 / 3e-55 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10020002 [exp] 201 / 1e-54 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018075 [exp] 200 / 3e-54 AT2G41720 1020 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10015530 [exp] 199 / 6e-54 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 198 / 1e-53 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G118500 [exp] 1014 / 0 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.002G193900 [exp] 1003 / 0 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.015G069100 [exp] 273 / 4e-80 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.001G297300 [exp] 237 / 2e-67 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 237 / 3e-67 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 206 / 5e-57 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 204 / 7e-57 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 202 / 3e-56 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 201 / 6e-56 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 201 / 3e-55 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022290 pacid=23139472 polypeptide=Lus10022290 locus=Lus10022290.g ID=Lus10022290.BGIv1.0 annot-version=v1.0 ATGCTCCGGGAGCTTGGCAACAATGGGGATTGGGGGAGAGCACTTTGCTGCTTCGAATTCGCCATCAAGAGAGAAAAAAGGAAGCTGGAGAAGGGCAAAT TAGCGAGCTCCATGATCAGCACGCTTGGTAGGTTAGGTAAAGTCGAGCTTGCCAGGAGTGTTTTCGAGACTGCTTTTAACCAAGGGTATGGAAACAATGT CTACACTTTCTCTGCTTTGATTAGTGCTTATGGGAAGAGTGGCCACTGTAATGAAGCTGTTCAGGTCTTGGAGTCGATGAAATACTATGGATTGAAGCCG AATTTGGTTACTTACAATGCTGTCATTGATGCCTGTGGAAAAGGAGGAGTGGAGTTTAGCAAACTTGTAGACATTTTCAACCTTATGTTGAAGGATGAAG TGCAGCCGGATAGGATAACTTATAATACACTTCTGGCTGTGTGTAGCAGAGGAGGCTTCTGGGACACTGCGAAACGTTTATTTAGTGAAATGGAAGGTAG AGGGATTGAACGGGATTTGCATACTTACAACACCCTTTTAGATGCGGCTTGTAAAGCTGGGCAGTTGGATGTTGCTTCACAGATTTTGTCTGAGATGCCT ATAAAGAAGATGTTCCCCAATGTGGTTACTTATAGTATTATGATTGATGGCTATGCTAAGGCTGGTAGATTGAATGGCGCCCTTTTGTTGTTTAACGAAA TGAAGCTTAAGGGTATTGAGTTGGATAGGGTTCTCTATAATACTTTGCTTTCTGTTTATGCTAACCTTGGTAAGCTCGAGGAGGCCTTGGACGTGTACAA GGAGATGCGAGCTTTCGGGTTCGGAAGAGATGTTGTTACTTATAATGCACTCATAGCTACGTTTGGGAAGAAATGCAAGTATGATGAGGTGAGGAGAGTG TTTGAAGACATGAAACTGCAACGTCTGTCGCCAAATTTGGTTACCTACTCGACTTTGATTGATGTGTATTCTAAAGGCGGTTTCTATAATGAAGCCATGG AAGCATTTAGGGATCTGAAGCTAGCAGGATTTGAGGCTGACGTTGTTCTCTACAGTGCACTTATTAATGTGCTATGCGTAAATGGATTTGTTGAAACTGC AGTCTCTTTGCTGAATGAGATGACAAAGGCGGGTACCAGACCTAATGTGGTCACTTACAACTCTATCATCAATGGTTTTGTCCTGTCATTTGACTCTGAA TCTCTGGCTAGTGATGCCGGGGAAACCAATGAGTTGCAGCTTGGCACTGTGCAGCCACCAACCATCAAGGAAGTTACTCAAGGGGAGATGATGGAAAATG GGGATAACAAGATCATGAAGATATTTGGCCAGCTAGCAGCAGAGAAGACTGGTCAGTCAAAGAATGGAGGCAGGAACGAACTGTTGTGCATTTTGGGACT CTTCCGTAAAATGCATGAGCTGAAAATCAGACCAAATGTCGTGACTTTTTCGGCCATCTTAAATGCTTGCAGCCGTTGTAATTCGTTTGAAGATGCCTCG GCTTTACTGGAGGAGCTACGCACATTCGATAATGAGATATATGGTGTAACTCATGGCCTCCTGATGGGTTATAGGGGAAATGCTTGGTTGCAGGCATTGT CACTCTTTGATGAAATGAAATCGCTGGACACTCCAACCGCATCCGCCTTCTATAATGCACTAACAGACGTGTTGTGGCATTTCGGACAGAAGCGCGGTGC CCAGCTAGTTGTACTTGAAGGGAAACGTCGACAGGTATGGGAGACTGTGTGGTCAGACTCCTGCTTAGATCTGCATTTGATGTCCTCTGGTGCTGCTCGA GCAATGGTCCACTCCTGGTTGCTAGACATACGCTCTATCGTATTCGAAGGCAGGGAGCTGCCGAAATGGTTGAACATTCTGACCGGATGGGGCAAACATA GTAAAGTTGTAGGGAACAGTGCACTGAAACGAGCCGTGGAGGCTCTTCTAACCCAGATGGGAGCGCCATTCCAGTTGGAAAAGTGCAATTTGGGTAGGTT TACATCATCAGGAGCAGTTGTTTCTGCATGGCTAAGAGAACCCGATGCTTTGAAAGTTCTTGTCCTAAATGACCTGAGATCAGGTGAAGCTGCTGCTACT GCTGAGATGCAATTGGTTCCATTGTAG
AA sequence Show only first row Show all	>Lus10022290 pacid=23139472 polypeptide=Lus10022290 locus=Lus10022290.g ID=Lus10022290.BGIv1.0 annot-version=v1.0 MLRELGNNGDWGRALCCFEFAIKREKRKLEKGKLASSMISTLGRLGKVELARSVFETAFNQGYGNNVYTFSALISAYGKSGHCNEAVQVLESMKYYGLKP NLVTYNAVIDACGKGGVEFSKLVDIFNLMLKDEVQPDRITYNTLLAVCSRGGFWDTAKRLFSEMEGRGIERDLHTYNTLLDAACKAGQLDVASQILSEMP IKKMFPNVVTYSIMIDGYAKAGRLNGALLLFNEMKLKGIELDRVLYNTLLSVYANLGKLEEALDVYKEMRAFGFGRDVVTYNALIATFGKKCKYDEVRRV FEDMKLQRLSPNLVTYSTLIDVYSKGGFYNEAMEAFRDLKLAGFEADVVLYSALINVLCVNGFVETAVSLLNEMTKAGTRPNVVTYNSIINGFVLSFDSE SLASDAGETNELQLGTVQPPTIKEVTQGEMMENGDNKIMKIFGQLAAEKTGQSKNGGRNELLCILGLFRKMHELKIRPNVVTFSAILNACSRCNSFEDAS ALLEELRTFDNEIYGVTHGLLMGYRGNAWLQALSLFDEMKSLDTPTASAFYNALTDVLWHFGQKRGAQLVVLEGKRRQVWETVWSDSCLDLHLMSSGAAR AMVHSWLLDIRSIVFEGRELPKWLNILTGWGKHSKVVGNSALKRAVEALLTQMGAPFQLEKCNLGRFTSSGAVVSAWLREPDALKVLVLNDLRSGEAAAT AEMQLVPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10022290 [exp]	0	1
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10035587 [exp]	2.4	0.9172
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	3.9	0.9256
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	8.8	0.9251
AT2G13440			glucose-inhibited division fam...		Lus10026055 [exp]	10.0	0.9094
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10029134 [exp]	12.7	0.8825
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10032109 [exp]	17.7	0.8955
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	20.0	0.8917
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10033127 [exp]	20.0	0.8958
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Lus10010344 [exp]	24.6	0.8358
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	25.4	0.8953

Compare expression of checked genes

Lus10022290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.