Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14430 855 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 786 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 782 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G14360 780 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G10200 489 / 4e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04060 487 / 2e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 478 / 1e-161 Putative methyltransferase family protein (.1) AT1G77260 474 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 472 / 4e-159 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 466 / 1e-157 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003656 [exp] 1161 / 0 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10011815 [exp] 794 / 0 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021177 [exp] 704 / 0 AT1G04430 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10038973 [exp] 499 / 3e-171 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10027266 [exp] 496 / 3e-170 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 474 / 7e-161 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 469 / 3e-158 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 468 / 3e-158 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 466 / 3e-157 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342300 [exp] 977 / 0 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G036800 [exp] 778 / 0 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 763 / 0 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G043600 [exp] 487 / 2e-166 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 485 / 1e-164 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 473 / 5e-160 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 462 / 4e-156 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 456 / 5e-154 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 454 / 3e-153 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 454 / 1e-152 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10022291 pacid=23139395 polypeptide=Lus10022291 locus=Lus10022291.g ID=Lus10022291.BGIv1.0 annot-version=v1.0 ATGAAGCAGAAAAGTGACCAACGCCGCACTTCCAAGCTCATCACTTACCTTCTCCTCATTCTCATCCTCCTCCTCGGCCTCCTCTGTTTGTTTTACGCCT CTTCCTTCGCGCCCGGATCCGACCCGGATTTCCTCCGTCACGACCTCGGTTCCTTTCCTGGTACCCGAGACTTCGACGATGACTTTCTCCAGGATCCGCA AGTGCCCAGAAGCATACCCATCTGCGACATGAAGTACTCTGAGCTGATACCTTGCTTGGATAGAGAGCTCATTTACCAGATGAGGTTGAAGCTTAACTTG TCCTTGATGGAGCATTATGAGCGTCACTGTCCGCCGCCACAGCGCCGCCTCAATTGTCTCGTCCCGCCGCCTGCTGGCTACAAGGTTCCAATCAAATGGC CAGAGAGTAGAGATGAAGTGTGGAAGGCTAATATCCCACATACCCACTTGGCAAAGGAGAAATCTGATCAGAACTGGATGGTTGTCAATGGCGATAAGAT CAATTTCCCCGGTGGAGGAACCCATTTCCATTATGGCGCTGACAAGTACATTGTTTCCCTCGCTAGGATGCTTAAGTTCCCAAATGAAAGACTTCACAAT GGTGGGAACGTCAGGAGTGTTCTCGACGTGGGTTGTGGGGTTGCGAGTTTCGGGGCATATCTTCTTCAGCATAGCATCATAGCCATGTCCCTTGCGCCGA ACGATGTTCATCAGAACCAAATACAGTTTGCATTGGAGAGAGGGATTCCGTCCACTCTCGGTGTTCTCGGCACCAAGAGGCTTCCTTATCCAAGTAGATC ATTCGAATTGGCTCATTGTTCGCGGTGTCGGATTGATTGGCTCCAGAGGGATGGAATCCTGCTGCTAGAGCTTGATAGGGTTCTAAGGCCAGGAGGTTAT TTCGCATACTCGTCTCCGGAAGCCTATGCTAAGGATCCAGAGAATCAAAGGATCTGGAATGCTATGCATGATCTTCTGAAAAGGATGTGCTGGAGGGTTG CTTCAAAGAAAGACCAAACTGTAATTTGGCAAAAGCCGCTGAGCAATAGTTGTTATTCGAGAAGAGAACCCGGGACTCAGCCTCCTTTGTGTGGTTCGGG TGATGATGCTGATGTAACATGGAATGTGGACATGAAGGCCTGCATTTCCCCTTACTCAGCACAGATGCACAGGGAGAAGGGGACCGGACTGGTTCCTTGG CCGCAGAGGCTTATCACGGCACCTCCTCGATTGGAAGACATTGGTGTTGGTCCTGAAGCGTTCCATGAGGATACTCGGATATGGAAGTTTAGGTTGAATG AGTACTGGAAGCAGATGAAATCTGTTGTAAGGAAGAGTTACTTCAGGAATGTGATGGATATGAATGCAAATTTGGGGGGTTTTGCTGCTGCACTCAAAGA TACAGATGTCTGGGTGATGAATGTCGCTCCAGCTAATGTTTCTGCTCGGCTGAAGATCATTTACGACCGTGGCTTAATCGGAACAGTTCATGACTGGTGC GAAGCATTCTCCACTTACCCAAGGACATACGATCTTCTTCATGCGTGGGCTGTATTCTCGGAGATTGAGGAGAGGGGGTGCAGTGCGGAGGATCTACTTA TCGAAATGGATAGGATACTGAGGCCTGAAGCATTCGTCATCATAAGAGACAAGCCTTCGATTGTTAACTACATCGTGAAGTCCTTACCAGCCTTGAAGTG GGATCGGTGGGTGTCAGAGGTTGAGCCGAGCACTGATGCTCTCTCGTTGGGCGAAGAACGTGTACTAATCGCGAGGAAGAAGTCATGGAACAAGTAG
AA sequence Show only first row Show all	>Lus10022291 pacid=23139395 polypeptide=Lus10022291 locus=Lus10022291.g ID=Lus10022291.BGIv1.0 annot-version=v1.0 MKQKSDQRRTSKLITYLLLILILLLGLLCLFYASSFAPGSDPDFLRHDLGSFPGTRDFDDDFLQDPQVPRSIPICDMKYSELIPCLDRELIYQMRLKLNL SLMEHYERHCPPPQRRLNCLVPPPAGYKVPIKWPESRDEVWKANIPHTHLAKEKSDQNWMVVNGDKINFPGGGTHFHYGADKYIVSLARMLKFPNERLHN GGNVRSVLDVGCGVASFGAYLLQHSIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGY FAYSSPEAYAKDPENQRIWNAMHDLLKRMCWRVASKKDQTVIWQKPLSNSCYSRREPGTQPPLCGSGDDADVTWNVDMKACISPYSAQMHREKGTGLVPW PQRLITAPPRLEDIGVGPEAFHEDTRIWKFRLNEYWKQMKSVVRKSYFRNVMDMNANLGGFAAALKDTDVWVMNVAPANVSARLKIIYDRGLIGTVHDWC EAFSTYPRTYDLLHAWAVFSEIEERGCSAEDLLIEMDRILRPEAFVIIRDKPSIVNYIVKSLPALKWDRWVSEVEPSTDALSLGEERVLIARKKSWNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10022291 [exp]	0	1
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	4.0	0.8472
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	5.1	0.8496
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	5.7	0.8288
AT2G17550			unknown protein		Lus10035987 [exp]	5.9	0.8254
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	11.5	0.8299
AT3G01720			unknown protein		Lus10022320 [exp]	11.5	0.8010
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10012847 [exp]	16.1	0.7980
AT5G48460			Actin binding Calponin homolog...		Lus10025865 [exp]	18.7	0.7825
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	19.5	0.8018
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10012650 [exp]	19.9	0.7663

Compare expression of checked genes

Lus10022291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.