Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 412 / 3e-144 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25300 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17010 408 / 1e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 398 / 1e-138 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 382 / 2e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 270 / 2e-88 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 246 / 4e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 236 / 8e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 232 / 1e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 232 / 5e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032574 [exp] 497 / 3e-177 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10026173 [exp] 402 / 1e-139 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011985 [exp] 381 / 2e-131 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10011980 [exp] 378 / 1e-130 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011981 [exp] 369 / 5e-127 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10011979 [exp] 369 / 7e-127 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10015252 [exp] 353 / 4e-121 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10030934 [exp] 342 / 2e-116 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10040112 [exp] 331 / 3e-112 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G381700 [exp] 479 / 2e-170 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G382400 [exp] 447 / 6e-158 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G355100 [exp] 399 / 4e-139 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.009G025900 [exp] 380 / 1e-131 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355200 [exp] 322 / 1e-108 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G022800 [exp] 293 / 2e-97 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 264 / 5e-86 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 251 / 7e-81 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 244 / 3e-78 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 241 / 3e-77 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10022292 pacid=23139484 polypeptide=Lus10022292 locus=Lus10022292.g ID=Lus10022292.BGIv1.0 annot-version=v1.0 ATGGAGTCAACGAGGAAATCTATCAGCATGGGGAGCTCCCTGCTGGTGCCTTCTGTCCAGCAACTTGTTGAGGAGCAAATCGGTGTTTCAGTCCCTTCCA GATACTTACGCCCTGAGCTCATCGATCAACTCGTCGTCCTAGAAAATGATGGGCCAGAGGTCCCGGTTGTTGATTTAGACAAGCTGCTAAATGAATCCTC CGTGGATTCCGAGCTTCAGAAGCTCCACTCTGCCTGTAAAGATTGGGGCTTTTTCCAGTTGGTAAATCACGGAGTGAGCTCTGCTCTGCTAGAGGACATG AAGACACAGATTCAGGAATTCTTCAACCTCCCAATGGAAGAAAAGAAGAAGTTTTGGCAATATCCAGGCGAAGTCGAAGGGTTCGGTCAGTCATTCGTTG TGTACGAGGAGCAGAAGCTTGATTGGGGCGACATGTTTTTCCTTCTCACCCACCCTCTCCACCTCAGAAAGCCTCACTTGCTCCCAAACCTTCCACTTCC TTTCAGAGACACGTTGGAGAGCTACTCGTACGAAATCAAGCAACTTGCAGGCAAGGTGCTCGACCAAATGTCCAAAGCATTAAACATGAAGCCTGAGGAA ATGAGGGACATGTTCTCAGGGGACATAAGACAGACAACGAGGATGAACTACTATCCTCCGTGTCCTCAACCGGACAAAGTCATCGGCTTGACCCCTCATT CCGACGGAACAGGGCTGACAATCCTGTTACAAGTCAACGAAGTGGAAGGGCTGCAGATAAAGAGAGATGGCAAGTGGGTTGCAGTCAAGGTACTCCCCAA TGCATTTGTGGTTAACGTTGGTGACATTATGGAGATCATAAGCAACGGGGAGTACAGGAGTATCGAGCATCGAGCTACCGTGAATTCGGAGAAGGAGAGA CTTTCAGTTGCATGCTTCCACTCGCCTAGGTTTGACGGAGAGATTGGGCCGGCGAGAAGCTTGGTTGGTGGGAAACCAGCATTGTTCAAGACGGTTACTG TTAGGGAGTTTGTTAAGGGCTTGTTCTCTCGTGAACTTCAAGGGAAGTCTTACCTCGATACCTTGAGAATCTAA
AA sequence Show only first row Show all	>Lus10022292 pacid=23139484 polypeptide=Lus10022292 locus=Lus10022292.g ID=Lus10022292.BGIv1.0 annot-version=v1.0 MESTRKSISMGSSLLVPSVQQLVEEQIGVSVPSRYLRPELIDQLVVLENDGPEVPVVDLDKLLNESSVDSELQKLHSACKDWGFFQLVNHGVSSALLEDM KTQIQEFFNLPMEEKKKFWQYPGEVEGFGQSFVVYEEQKLDWGDMFFLLTHPLHLRKPHLLPNLPLPFRDTLESYSYEIKQLAGKVLDQMSKALNMKPEE MRDMFSGDIRQTTRMNYYPPCPQPDKVIGLTPHSDGTGLTILLQVNEVEGLQIKRDGKWVAVKVLPNAFVVNVGDIMEIISNGEYRSIEHRATVNSEKER LSVACFHSPRFDGEIGPARSLVGGKPALFKTVTVREFVKGLFSRELQGKSYLDTLRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	0	1
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	1.0	0.9680
					Lus10019190 [exp]	2.2	0.9514
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	2.4	0.9670
AT3G50150			Plant protein of unknown funct...		Lus10004516 [exp]	2.6	0.9460
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	3.5	0.9572
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	5.3	0.9519
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	5.5	0.9479
AT4G10300			RmlC-like cupins superfamily p...		Lus10037245 [exp]	6.0	0.9338
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	9.4	0.9453
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	9.5	0.9420

Compare expression of checked genes

Lus10022292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.