Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35850 582 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 85 / 1e-17 RPF2 rna processing factor 2 (.1) AT5G16640 80 / 6e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 79 / 2e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 78 / 3e-15 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 77 / 9e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G41170 75 / 3e-14 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62680 74 / 7e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 74 / 1e-13 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 72 / 3e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003653 [exp] 825 / 0 AT4G35850 612 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 80 / 9e-16 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10034421 [exp] 77 / 1e-14 AT2G02150 706 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 76 / 2e-14 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038788 [exp] 76 / 3e-14 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012068 [exp] 75 / 4e-14 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 75 / 4e-14 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034616 [exp] 74 / 7e-14 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039071 [exp] 74 / 7e-14 AT4G16390 808 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341400 [exp] 612 / 0 AT4G35850 570 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G037200 [exp] 87 / 6e-18 AT5G25630 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G098400 [exp] 86 / 1e-17 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G081700 [exp] 82 / 2e-16 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.006G019000 [exp] 80 / 7e-16 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G066600 [exp] 78 / 3e-15 AT2G26790 521 / 4e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 78 / 5e-15 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 77 / 5e-15 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 77 / 1e-14 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G166001 [exp] 76 / 1e-14 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022296 pacid=23139463 polypeptide=Lus10022296 locus=Lus10022296.g ID=Lus10022296.BGIv1.0 annot-version=v1.0 ATGACGGTTCTCCAAACATTGGGCCGTCGTTACTACGCTGCCGCTGCCGTTGCTTCACCGGAGGAGTACGCCAAGCGGAATTACGCAAACAATGTGGCCG AGTATAACACCGTCATTGGTTCCCTCACTTCTCAACGCAGGGCTTACTTGTTGAGAGATGTGTATGATGATATGGTGCTCGATGGAGTTCAGCCGGGGCG AGATGTTTTCCATTCGTTGATTGTTGGAACCATGAAAGGCGCTCGCTTGCAAGATGCTTTCTACTTCAGAGATGAAATGAAAGCTATGGGCTTGGTTCCT GATGTAGCATTGTACAATTTCTTAATTGCAACTTGTGGGAAGTGCAAGAATTCCAACCAAGCGGTTCAGATTTTTGAAGAAATGAAGCGGTATGAAGTGA AGCCAAATGGACAAACCTATGTCTGTCTGCTTAATGCATGTGCAGCAGATGGTCGGGTCGACCGAGTGTACGCAATCGTCCGTGATATGACTGCTGCTGC TGCTGGCTTGAACAAATTCTGCTATGCTGGACTGATAACTGCCCATCTGAACAAGACACCTCTTGGAGATGATACAGCCAGCAAGATAGTTGAGTTAGTT GAGCAGTCAAAAGGATGGTCATCTGTTGATGGAGCAACTTATGTTGCTGAAAATGTGATGAGGGATCTATCTGAGGAGGAGTTGTATAATTTGCCAACTG CTGAATATGTTCGTAGACGTGGAGGTTTCTTGAATAAGAATCTTACTGTATATCATGTTGCACTTTATGCCTGTGCTGAACTAAAAAATGTAGAGGCAAC GGAAACTCTAATGGGAATGCTTCAGAAGGATGGGCAGTCTCCTGATGTCTTCATTCTGATGCAAGCAATGAGGTGCCATCTACAGTCCGGTGACCTGGAT CGCGGTCTTAGTATCTTTGAAGATTACATGAATTCTGGCAAGCCTCCAATGATTGAGCTCTTTTTGACACTAATAGAGGGAGCCATGGTAGGATATACTC CCAAGGGAATGCAACTTGCACAAGATACTCTGGTAAAAATGACTGAAAGGAACTTTTTATTGAATCCCAAAAGCGGAAATGACCTCCTCCTTTTAGCTGC TGGCGAAAAGACTGGTGGGTACACAACTGCAAATTACATATGGGACTTGATGCAAGCTCGTAACATAACACCCAATTTCCTTGCGGTGGAAGCATACTAC AATGGTTTGAAAGGTCGAGAGGTACCTGAAGATGATCCAAGGCTGTTACTGGTTTCACAAGCTTACGACAAACAGCGTTCGAGATTTGGGCCGAGAGGGG AAAGGATGAGAACAGCTGACTGA
AA sequence Show only first row Show all	>Lus10022296 pacid=23139463 polypeptide=Lus10022296 locus=Lus10022296.g ID=Lus10022296.BGIv1.0 annot-version=v1.0 MTVLQTLGRRYYAAAAVASPEEYAKRNYANNVAEYNTVIGSLTSQRRAYLLRDVYDDMVLDGVQPGRDVFHSLIVGTMKGARLQDAFYFRDEMKAMGLVP DVALYNFLIATCGKCKNSNQAVQIFEEMKRYEVKPNGQTYVCLLNACAADGRVDRVYAIVRDMTAAAAGLNKFCYAGLITAHLNKTPLGDDTASKIVELV EQSKGWSSVDGATYVAENVMRDLSEEELYNLPTAEYVRRRGGFLNKNLTVYHVALYACAELKNVEATETLMGMLQKDGQSPDVFILMQAMRCHLQSGDLD RGLSIFEDYMNSGKPPMIELFLTLIEGAMVGYTPKGMQLAQDTLVKMTERNFLLNPKSGNDLLLLAAGEKTGGYTTANYIWDLMQARNITPNFLAVEAYY NGLKGREVPEDDPRLLLVSQAYDKQRSRFGPRGERMRTAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10022296 [exp]	0	1
AT5G24510			60S acidic ribosomal protein f...		Lus10028876 [exp]	3.9	0.9339
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10022012 [exp]	4.7	0.9200
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	4.9	0.9317
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	8.1	0.9331
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10022910 [exp]	8.4	0.8799
AT5G19300			unknown protein		Lus10034063 [exp]	9.8	0.9185
AT5G59850			Ribosomal protein S8 family pr...		Lus10040309 [exp]	11.7	0.9277
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10024576 [exp]	11.8	0.9220
AT1G09590			Translation protein SH3-like f...		Lus10030607 [exp]	14.6	0.9308
AT3G06700			Ribosomal L29e protein family ...		Lus10037740 [exp]	15.2	0.9289

Compare expression of checked genes

Lus10022296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.