Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62600 497 / 3e-178 ATERDJ3B DNAJ heat shock family protein (.1) AT3G08910 166 / 2e-48 DNAJ heat shock family protein (.1) AT5G01390 163 / 2e-47 DNAJ heat shock family protein (.1.2.3.4) AT5G22060 150 / 1e-41 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 149 / 3e-41 ATJ3 DNAJ homologue 3 (.1.2) AT5G48030 114 / 2e-28 GFA2 gametophytic factor 2 (.1) AT2G20560 98 / 4e-23 DNAJ heat shock family protein (.1) AT4G28480 97 / 4e-23 DNAJ heat shock family protein (.1.2) AT2G20550 97 / 8e-23 HSP40/DnaJ peptide-binding protein (.1.2) AT1G10350 96 / 2e-22 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003651 [exp] 642 / 0 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 601 / 0 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 597 / 0 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10042891 [exp] 153 / 1e-42 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10028188 [exp] 148 / 9e-41 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10017687 [exp] 145 / 2e-40 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 117 / 2e-29 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 117 / 3e-29 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10035855 [exp] 113 / 9e-28 AT5G48030 524 / 0.0 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198000 [exp] 546 / 0 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 541 / 0 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.009G015700 [exp] 172 / 3e-50 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 171 / 1e-49 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 170 / 3e-49 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 168 / 2e-48 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.008G194000 [exp] 143 / 4e-40 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 138 / 5e-38 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 122 / 3e-31 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 117 / 2e-29 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022297 pacid=23139351 polypeptide=Lus10022297 locus=Lus10022297.g ID=Lus10022297.BGIv1.0 annot-version=v1.0 ATGGCGCATCAAGGAGCGAAGCTCTTCTTCTTACTATGCGCTCTGTCGTATGCTCTAATCACCATTGCCGGAAAGAGCTATTATGACGTATTGCAAGTGG CGAAAGGTGCTTCCGATGATCAGATCAAGCGAGCTTATAGGAAGCTGGCATTGAAGTATCATCCCGATAAGAACCCTGGAAATGATGAAGCCAATAAGCG CTTTGCTGAGATTAGCAACGCGTACGAGGTGTTGTCCGATAGCGAGAAGAGGAAGATTTATGATGCTTATGGAGAGGAAGGGCTTAAACAGCATATGGCC GGTGGAGGACGCGGTGGAGGAATGGACATTCAAAACATTTTTGAAACATTCTTTGGCGGAGGAGGTCCTCAGGAAGAAGAGGAAGAGAGGATTCCCAAAG GCGATGATGTCATTGTGGATCTTGATGCTACCCTGGAGGATCTATACATGGGAGGTTCGGTTAAGGTATGGAGAGAAAAGAATGTTATAAAACCGGCCCC GGGAAAGAGACGCTGTAACTGCAGAAATGAGGTCTATCATAGGCAAATTGGTCCAGGGATGTTCCAGCAGATGACAGAGGAGGTCTGTGATCAATGCCAA AATATCAAACATGAAAGGGAAGGTTACTCACTCACAGTTGATATCGAGAAAGGAATGCAAGATGGACAAGAGGTAGTTTTCTACGAAGATGGCGAGCCCA AGGTAGATGGAGAACCTGGAGATTTAAAATTCCGTATTCGGACTTCACCTCATGACGTCTTCACAAGGAAAGTCAATGACTTGCACACAACAGTCACCAT CACACTGGTTCAAGCACTCGTTGGCTTTGAGAAGAAAATGAAGCACCTCGACGAACATCTAGTTGACATCAGCACTCAGGGAATCACAAAGCCGAAAGAA GTAAGGAAGTATAAAGGAGAAGGGATGCCGTTGTATGCAAGCAATAAGAAGGGCGACCTTTACGTAACATTCGAGGTACTGTTCCCTAGCTCATTGACAC AGGAGCAGAAGACAAAGATCAAGGACATTCTTGGCTAG
AA sequence Show only first row Show all	>Lus10022297 pacid=23139351 polypeptide=Lus10022297 locus=Lus10022297.g ID=Lus10022297.BGIv1.0 annot-version=v1.0 MAHQGAKLFFLLCALSYALITIAGKSYYDVLQVAKGASDDQIKRAYRKLALKYHPDKNPGNDEANKRFAEISNAYEVLSDSEKRKIYDAYGEEGLKQHMA GGGRGGGMDIQNIFETFFGGGGPQEEEEERIPKGDDVIVDLDATLEDLYMGGSVKVWREKNVIKPAPGKRRCNCRNEVYHRQIGPGMFQQMTEEVCDQCQ NIKHEREGYSLTVDIEKGMQDGQEVVFYEDGEPKVDGEPGDLKFRIRTSPHDVFTRKVNDLHTTVTITLVQALVGFEKKMKHLDEHLVDISTQGITKPKE VRKYKGEGMPLYASNKKGDLYVTFEVLFPSSLTQEQKTKIKDILG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10022297 [exp]	0	1
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10032071 [exp]	4.5	0.7037
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10034535 [exp]	5.3	0.6994
AT4G16660			heat shock protein 70 (Hsp 70)...		Lus10039014 [exp]	6.2	0.6931
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10035719 [exp]	6.9	0.6647
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10036912 [exp]	26.3	0.6083
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10032100 [exp]	29.7	0.5655
AT5G65470			O-fucosyltransferase family pr...		Lus10002653 [exp]	33.3	0.6184
AT1G19835			Plant protein of unknown funct...		Lus10033813 [exp]	46.0	0.5246
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027431 [exp]	72.4	0.5879
AT3G07600			Heavy metal transport/detoxifi...		Lus10016063 [exp]	72.9	0.5823

Compare expression of checked genes

Lus10022297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.