Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14400 282 / 3e-94 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT3G50660 225 / 3e-70 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G05690 179 / 2e-54 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 179 / 8e-53 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT3G30180 176 / 4e-52 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT1G55940 179 / 6e-52 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1) AT5G38970 174 / 8e-52 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT4G36380 174 / 8e-51 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT1G12740 171 / 8e-50 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G19270 170 / 1e-49 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003650 [exp] 531 / 0 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10016065 [exp] 259 / 3e-83 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10000647 [exp] 190 / 4e-57 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10028297 [exp] 181 / 3e-55 AT5G05690 472 / 2e-168 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10024495 [exp] 183 / 2e-54 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10030404 [exp] 176 / 8e-53 AT5G05690 531 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10005075 [exp] 176 / 4e-52 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10031866 [exp] 177 / 5e-52 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10031295 [exp] 177 / 8e-52 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341000 [exp] 333 / 7e-113 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.014G171700 [exp] 257 / 4e-83 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.007G026500 [exp] 225 / 1e-70 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 223 / 1e-69 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.010G156800 [exp] 195 / 4e-59 AT3G30180 561 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.008G067500 [exp] 189 / 8e-57 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.003G122500 [exp] 182 / 5e-54 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.010G189800 [exp] 181 / 7e-54 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.017G154600 [exp] 181 / 1e-53 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.001G200100 [exp] 181 / 1e-53 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10022298 pacid=23139422 polypeptide=Lus10022298 locus=Lus10022298.g ID=Lus10022298.BGIv1.0 annot-version=v1.0 ATGAAAGGGTTTATCTCGCTACCTCTCAACATCCCAGGATTAGCTTATGCCCAAGGTGTTAAGGCGAGAGCAAGGCTATCGAGGGTGGTGAAGGGGATAA TAAAAGAAAGGAAGGAGGCGCAGGGGAAAACGACGACGTCGTACGCAGAGGAAGAGGGAGACTTCTTAGACGAGATACTGTCAAAGCACAGCAGCACGAG GAATATGAACGACGAGGAGATAGTGAGCAATGTGCTGGATATACTTATGGGTGGCTACGAGACAACCTCCACCCTCATTTCCATTGTTCTCTACTTCCTC CACCGCTCCCCCGCCGCCTTCCACGCCTTTAAGGAAGAGCATCAACGTATCAGGAGGAGCAAAGGGAATCATCATCTCCCCTTGAATTGGGATGACTACC AGAATATGTCCTTCACCCACTGTGTGACGCGCGAAGCAGTGCGATGCGGGAACGTGGTGAAGTTCTTACACAGGAAGGCAGTCCAAGACGTGGAATTCAA AGGCTACTTCATTCCAGCAGGGTGGAAGGTTCTTCCGATATTAAGCGGTGCAAATCTGGACCCAGATCTTCACCATGAAAGCCTTCGATTCAATCCGTGG AGATGGATGGAGGACAAGGAAATAAACAAGAAAGTAATGGGGTACGGAGGCGGAGCGAGAGTGTGTCCAGGTGCCGATCTAGCTAAAGTCATGGTCGCCT TCTTTCTTCATCACCTTGTCCTCTCCTACACTTGGAAAGTCAAAGAAGACGATGATCACCCGGTGGCGTATCCCTACGTCGAGTTTCGGAATGGTCTTGT TCTGGAGATTGAACCAGAGCCATTCCTACTGTAG
AA sequence Show only first row Show all	>Lus10022298 pacid=23139422 polypeptide=Lus10022298 locus=Lus10022298.g ID=Lus10022298.BGIv1.0 annot-version=v1.0 MKGFISLPLNIPGLAYAQGVKARARLSRVVKGIIKERKEAQGKTTTSYAEEEGDFLDEILSKHSSTRNMNDEEIVSNVLDILMGGYETTSTLISIVLYFL HRSPAAFHAFKEEHQRIRRSKGNHHLPLNWDDYQNMSFTHCVTREAVRCGNVVKFLHRKAVQDVEFKGYFIPAGWKVLPILSGANLDPDLHHESLRFNPW RWMEDKEINKKVMGYGGGARVCPGADLAKVMVAFFLHHLVLSYTWKVKEDDDHPVAYPYVEFRNGLVLEIEPEPFLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10022298 [exp]	0	1
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10039975 [exp]	16.7	0.6682
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10038982 [exp]	22.6	0.7222
AT2G06090			Plant self-incompatibility pro...		Lus10016350 [exp]	23.5	0.6750
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10041141 [exp]	23.8	0.6779
					Lus10007681 [exp]	44.4	0.6442
AT2G40070			unknown protein		Lus10002493 [exp]	66.9	0.6106
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10019226 [exp]	92.6	0.6416
AT5G10990			SAUR-like auxin-responsive pro...		Lus10042374 [exp]	99.6	0.5905
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10022422 [exp]	102.0	0.5711
AT5G36000			unknown protein		Lus10012627 [exp]	102.8	0.6120

Compare expression of checked genes

Lus10022298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.