Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01660 335 / 3e-116 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G29590 155 / 2e-45 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G69523 44 / 6e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G69526 42 / 0.0003 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003648 [exp] 269 / 3e-91 AT3G01660 214 / 3e-70 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040550 [exp] 163 / 2e-48 AT4G29590 429 / 3e-152 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036766 [exp] 42 / 0.0003 AT1G69523 246 / 2e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G340900 [exp] 366 / 5e-128 AT3G01660 361 / 3e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G150500 [exp] 158 / 2e-46 AT4G29590 415 / 9e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10022301 pacid=23139429 polypeptide=Lus10022301 locus=Lus10022301.g ID=Lus10022301.BGIv1.0 annot-version=v1.0 ATGCTCCGCTTCTATCCAAACCCAAAACCATGGCGGAAACACTCACCAGTAACGCCACCACCGCCGGTTACGGAGACGACCCGTAAACTACCCGCACATA TAAGAGCTTCAGTCGATGATAACATCAGCACAACCCAAGATTCTGGACCGGGCAATATCAGGCGCTTGGTCCTGACCCAACAAGGAAGAGCCAAACTCGA CCTCAAACCAGACAGAGACTTCTATGCCTACCCAAGGTTCGTCACCCACGTTGACGACGGATTCATCTCAACATTAACTGAGCTCTACAGCCATAGATTG AGACCTGGATCCGAGATCCTTGACCTGATGAGCTCCTGGGTCAGCCATCTGCCTCAGAAAATGGAGTTCAAAAGAGTCGTGGGTCATGGGCTTAACTCCC AGGAGCTTGCCAGGAACCCTCGACTTGATTATTTCTTTGTCAAGGATCTTAACAAGGAACATAAGCTTGAGCTGGAAAGCGCCAGCTTTGATGCGGTTCT TTGCACTGTTAGCGTCCAGTATCTGCAACAGCCGGAGCAGGTTTTTGCGGAAGTGTTCAGAGTGCTGAGACCTGGAGGCGTGTTCATTGTGAGTTTTAGC AATCGGATGTTCTACGAAAAGGCAGTTGCTTCCTGGAGAGATGGTAGCGAGTACAGCAGAGTGCAGCTTGTGGTGCAGTATTTCCAGACTGTTGTTGGAT TTACGGAGGCGGAGGTTGTCAGGAAATTGCCTGGCAGGAAAGAGGAAAGTATAGGGTCCAGTTGGTTCAAAGGGTTGCTTGGCCTGTTGTCTGGATCATC ATCAGATCCCTTTTATGCTGTCATCGCTTACAAGAACTTTAAGCCTGTTTATGAATGA
AA sequence Show only first row Show all	>Lus10022301 pacid=23139429 polypeptide=Lus10022301 locus=Lus10022301.g ID=Lus10022301.BGIv1.0 annot-version=v1.0 MLRFYPNPKPWRKHSPVTPPPPVTETTRKLPAHIRASVDDNISTTQDSGPGNIRRLVLTQQGRAKLDLKPDRDFYAYPRFVTHVDDGFISTLTELYSHRL RPGSEILDLMSSWVSHLPQKMEFKRVVGHGLNSQELARNPRLDYFFVKDLNKEHKLELESASFDAVLCTVSVQYLQQPEQVFAEVFRVLRPGGVFIVSFS NRMFYEKAVASWRDGSEYSRVQLVVQYFQTVVGFTEAEVVRKLPGRKEESIGSSWFKGLLGLLSGSSSDPFYAVIAYKNFKPVYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10022301 [exp]	0	1
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10007021 [exp]	1.4	0.8771
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10006804 [exp]	8.2	0.8664
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	11.5	0.8757
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	16.0	0.8722
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10004623 [exp]	21.0	0.8260
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	23.2	0.8437
AT5G52420			unknown protein		Lus10039248 [exp]	26.4	0.8550
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	27.1	0.8470
AT1G64680			unknown protein		Lus10001667 [exp]	34.6	0.8537
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022891 [exp]	35.7	0.8153

Compare expression of checked genes

Lus10022301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.