Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17860 171 / 5e-52 Kunitz family trypsin and protease inhibitor protein (.1) AT2G32320 154 / 1e-42 tRNAHis guanylyltransferase (.1.2.3) AT2G31580 154 / 5e-42 tRNAHis guanylyltransferase (.1) AT1G73260 111 / 5e-29 ATKTI1 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) AT1G73325 96 / 2e-23 Kunitz family trypsin and protease inhibitor protein (.1) AT1G73330 77 / 2e-16 ATDR4 drought-repressed 4 (.1) AT1G72290 49 / 1e-06 Kunitz family trypsin and protease inhibitor protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039209 [exp] 345 / 4e-120 AT1G17860 179 / 6e-57 Kunitz family trypsin and protease inhibitor protein (.1) Lus10039210 [exp] 345 / 4e-120 AT1G17860 179 / 4e-57 Kunitz family trypsin and protease inhibitor protein (.1) Lus10013730 [exp] 342 / 7e-119 AT1G17860 175 / 2e-55 Kunitz family trypsin and protease inhibitor protein (.1) Lus10042301 [exp] 339 / 9e-118 AT1G17860 182 / 2e-58 Kunitz family trypsin and protease inhibitor protein (.1) Lus10013731 [exp] 342 / 1e-117 AT1G17860 172 / 5e-53 Kunitz family trypsin and protease inhibitor protein (.1) Lus10026357 [exp] 336 / 2e-116 AT1G17860 181 / 6e-58 Kunitz family trypsin and protease inhibitor protein (.1) Lus10013732 [exp] 317 / 3e-109 AT1G17860 166 / 4e-52 Kunitz family trypsin and protease inhibitor protein (.1) Lus10039208 [exp] 314 / 5e-108 AT1G17860 172 / 2e-54 Kunitz family trypsin and protease inhibitor protein (.1) Lus10011090 [exp] 311 / 1e-106 AT1G17860 161 / 4e-50 Kunitz family trypsin and protease inhibitor protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G153400 [exp] 202 / 6e-64 AT1G17860 223 / 1e-74 Kunitz family trypsin and protease inhibitor protein (.1) Potri.017G153466 [exp] 200 / 2e-63 AT1G17860 222 / 4e-74 Kunitz family trypsin and protease inhibitor protein (.1) Potri.017G153600 [exp] 197 / 3e-62 AT1G17860 217 / 3e-72 Kunitz family trypsin and protease inhibitor protein (.1) Potri.004G067600 [exp] 188 / 1e-58 AT1G17860 196 / 9e-64 Kunitz family trypsin and protease inhibitor protein (.1) Potri.004G067900 [exp] 181 / 1e-55 AT1G17860 183 / 2e-58 Kunitz family trypsin and protease inhibitor protein (.1) Potri.017G153200 [exp] 168 / 7e-51 AT1G17860 191 / 5e-62 Kunitz family trypsin and protease inhibitor protein (.1) Potri.002G233300 [exp] 169 / 6e-48 AT2G32320 737 / 0.0 tRNAHis guanylyltransferase (.1.2.3) Potri.004G067800 [exp] 136 / 2e-38 AT1G17860 137 / 8e-41 Kunitz family trypsin and protease inhibitor protein (.1) Potri.019G006900 [exp] 87 / 4e-20 AT1G73260 79 / 6e-18 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) Potri.001G309900 [exp] 82 / 3e-18 AT1G17860 90 / 2e-22 Kunitz family trypsin and protease inhibitor protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF00197 [flax] [poplar] Kunitz_legume Trypsin and protease inhibitor CL0066 [flax] [poplar] PF04446 [flax] [poplar] Thg1 tRNAHis guanylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10022302 pacid=23139444 polypeptide=Lus10022302 locus=Lus10022302.g ID=Lus10022302.BGIv1.0 annot-version=v1.0 ATGAAGACAACAATGCTACTCACAACATCTTCATTCATCATACTCCTCATCTCCTTCACCACACTTTCATCCGCAGCATCCCCGGCTACAGTCACAGACA TCGACGGTACACCCCTCCGATCGGGTCTCAAGTACTTCATCCTCCCATCAGTCTCCGGTAACGGAGGCGGTGTCGCCCTGGACAGAACCAAGACCAAGAA GTGTCCCCTTTCGGTCTTCCAAGATGACTACGAGCTCTCCAAGGGTCTCCCAGTAGTATTCCTGCCTGTCAACGCCAGGCCAGGCTACACCGTTCAAACG AACACCGATCTGAACATTGAGTTCACTGCAGAGACTGCATGCGACGAAGCCACCGTGTGGAAGGTGGAGAGTTATGACAACGACGTCAAGCAGTGGTTCG TCGGGACCGGCGGGATCGAAGGGAAGCCTGGTCCGAGGACCGTGGACAACTGGTTTAAGATTGCTAAATACGGCGGGAACTACAAGCTCGTGTATTGCCC TTCTGTGTGCAAGTCTTGCAAAGTTCAGTGTAAGGATGTCGGGGTTTACGCGGATGAAGATGGCAAGAAGAGGCTTGCTCTTACTGATGATGAGCCTTCC ATTGGTTCTAAAAAGCAAGACCAGAATGAGATACTTCATCAACAGTTCAATATCAATTACAATAATCTGCCGAAGATATTCCGCTGGGGTTCTTGCATCC TAATCATGGAGGTGGAGACTATTGTAAAATACAACAAGGATGGATCTCCAATACCAAGACTGAGAAAACAGATATCAACTGCACATTCCCAGGATATTGC TAGAAGAAACTTTTGGAATCATAAGCCACATCTCATTAAAGAACTGGGTGCTTTTGTCGAAGATATCACAAGAATTGATAAAGACTACGTCAAATTTTCT GAAGTTCACAAGTTCGAGAAGCCAAATGATGAACACTCGTTAAAGATGATGAATGAATGTGCTGTTTGTGTTCTGGAGGAGTTCCCTGAAGTTATGTTCT CGTATGGTGTTAGTGATTAG
AA sequence Show only first row Show all	>Lus10022302 pacid=23139444 polypeptide=Lus10022302 locus=Lus10022302.g ID=Lus10022302.BGIv1.0 annot-version=v1.0 MKTTMLLTTSSFIILLISFTTLSSAASPATVTDIDGTPLRSGLKYFILPSVSGNGGGVALDRTKTKKCPLSVFQDDYELSKGLPVVFLPVNARPGYTVQT NTDLNIEFTAETACDEATVWKVESYDNDVKQWFVGTGGIEGKPGPRTVDNWFKIAKYGGNYKLVYCPSVCKSCKVQCKDVGVYADEDGKKRLALTDDEPS IGSKKQDQNEILHQQFNINYNNLPKIFRWGSCILIMEVETIVKYNKDGSPIPRLRKQISTAHSQDIARRNFWNHKPHLIKELGAFVEDITRIDKDYVKFS EVHKFEKPNDEHSLKMMNECAVCVLEEFPEVMFSYGVSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17860			Kunitz family trypsin and prot...		Lus10022302 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Lus10039210 [exp]	1.0	0.9938
AT1G17860			Kunitz family trypsin and prot...		Lus10007890 [exp]	2.2	0.9879
AT1G17860			Kunitz family trypsin and prot...		Lus10007902 [exp]	2.4	0.9903
AT1G17860			Kunitz family trypsin and prot...		Lus10007892 [exp]	2.4	0.9931
AT5G09360		LAC14	laccase 14 (.1)		Lus10006157 [exp]	2.8	0.9892
AT1G17860			Kunitz family trypsin and prot...		Lus10013731 [exp]	4.6	0.9864
AT1G17860			Kunitz family trypsin and prot...		Lus10042301 [exp]	4.9	0.9872
AT1G17860			Kunitz family trypsin and prot...		Lus10013730 [exp]	6.7	0.9823
AT1G17860			Kunitz family trypsin and prot...		Lus10030355 [exp]	10.5	0.9618
AT1G17860			Kunitz family trypsin and prot...		Lus10039163 [exp]	10.6	0.9848

Compare expression of checked genes

Lus10022302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.