Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01680 744 / 0 SEOR1, SEOb Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein AT3G01670 463 / 2e-152 SEOa sieve element occlusion a, unknown protein AT1G67790 155 / 9e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000548 [exp] 1282 / 0 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10032103 [exp] 1179 / 0 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10014580 [exp] 1178 / 0 AT3G01680 758 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022306 [exp] 1172 / 0 AT3G01680 735 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10034567 [exp] 795 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10021828 [exp] 791 / 0 AT3G01680 592 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022304 [exp] 780 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000547 [exp] 736 / 0 AT3G01680 481 / 2e-163 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000551 [exp] 715 / 0 AT3G01680 539 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G340400 [exp] 1173 / 0 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340600 [exp] 1172 / 0 AT3G01680 746 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340500 [exp] 1163 / 0 AT3G01680 730 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340300 [exp] 1159 / 0 AT3G01680 718 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340200 [exp] 1158 / 0 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.017G071000 [exp] 1152 / 0 AT3G01680 693 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050300 [exp] 796 / 0 AT3G01680 577 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.008G183200 [exp] 786 / 0 AT3G01680 576 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050501 [exp] 785 / 0 AT3G01680 575 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050701 [exp] 739 / 0 AT3G01680 534 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11594 [flax] [poplar] Med28 Mediator complex subunit 28
Representative CDS sequence Show only first row Show all	>Lus10022305 pacid=23139458 polypeptide=Lus10022305 locus=Lus10022305.g ID=Lus10022305.BGIv1.0 annot-version=v1.0 ATGTCTCTGAGGTCACTTGCAGCAGGCACTGGTGCTAATATGCAGTTGATCAAGAATGATCGCGGTGGAATGCTATCGATGTCCGATGATAATGTGATGA TGAAGCAAGTCCAGGCAACTCATGCTCCTGATGGCAGAGAAGTTGATGTCAGACCCCTTCTTAACCTTGTTGAAGACATCCTCAGTCGTGCCACTCTCCA AGTTGACACTCCATTGCTGGCTAACAAAGCACATGCAGAACTGGAGGACAAGAACCACCAGATGAACTATGTCACCATGCTTGATGCACTGTCCTATACC ATTGACAGAATCTCTTGTGAGATAGCCTACAAGGCACTTGGAGGAGGAGATGCACATGGGACAACCATGACGATATGTGAAACACTTACAAACTATCAAT GGGATGCTAAGTTGGTGCTGACCTTGGCAGCTTTTGCATTGCACTATGGAGAGTTCTGGCTCCTTGCACAGATTTACTCCTCTAACCAACTTGCAAAGTC CATGGCTATCCTTAAGCAGCTGCCCTCTATCATGGAACATTCCGGACCGTTGAAGCCTCGCTTCGACGCTCTTAACAAACTCATCAAGGCCATATTGGAG GTGACTAGGTGTGTGGTTCACTTCAAGGAGCTTCCACCTATGTACATTTCACATGATGTGCCAGCATTGTCCACGGCCATGAGCCACATCCCGACTGCTG TCTACTGGACCATCCGAGGCATCATGGCTTTCGCAAATCAGATCACTCTTCTAACCACCATGGGCCAACAGTATGCACTATCAACCACAGAGTCATGGGA ACTTTCCACATTGGAGCACAAACTTGCCAACATATGCGAGCATCTGAGGATGCAATTAGCAACATGCCAACAACATATAGATGAGAAGAGAAGCGTCGAG GAGTACAAAATGCTGGTGGATCTGTTTGAAATGATTCACATTGACAACATGAAGGTGTTGAAGGCCCTAATCTATCCCAAGGATGATATCCAACCACTTG TTGATGGCTCTACCAAGAGAAGGGTGAACATTGATGTGCTTAGAAGGAAGAATGTGCTCCTACTGATCTCAGACCTCAACATTTCGAACGACGAGCTTTC AATTCTTGAGCAGATATACAATGAGTCCAGGCTCCATGCCACAAGGATGGACAACCAGTATGAGGTTGTGTGGATTCCATTGGTTGACCCTTCAATTAAG TGGAATGATCAGATGCAGAACAAGTTTGAAAGCATACAGTCTACGATGCCATGGTACTCGGTGTATCACCCTTCGTTGATCCACAAGGCAGTCATTAACT TTGTTAGGGAGAGTTGGCATTTCAGGAACAAGCCTATCCTTGTGGTACTTGACCCGCAAGGCAAGGTAGTTAGTCCCAATGCCATCCATATGATGTGGAT TTGGGGCAGCAATGCTTTCCCATTCACAAGTAGGAGGGAGGAAGATCTCTGGAGCACTGAAGCATGGAAGCTTGAACTTCTAGTCAACGGAATCGATCCT ATGATTCTCAACTGGATTAAGGAAGAGAAGTACATTTTCATCTATGGAGGGGATGATGTTGAATGGGTGAGGAAGTTCACAAACTCAGCACGAGCGGTTG CTACAGCAGCGCGGATTCCATTGGAGATGGTCTACGTTGGGAAGAGCAGTAAGAGAGAGCAGATAAGGAGAGTGATTGCAACAATCACAGTGGAAAAGCT GAGTTACTTCTGGCAAGACCTTACCATGATATGGTTCTTCTGGACAAGGCTGGAGAGCATGCTGTTCTCCAAGATTCAGCTAGGAAAGGTCGATGATCAT GATCCGATGATGCAGGAAATCAAGAAGCTCCTTAGCTATGACAAAGAAGGTGGATGGGCTATCCTCAGCAAGGGCTCCAACATCATCTCCAATGGACATG GAAACACTGTTCTGACAACATTGGTTGAGTATGACTTGTGGAAGGAAAACATTCCTGTTAAGGGCTTTGACCTGTCCTTTGATGAGCATCACAAGAAGAT TCATGGAGTTACTTATCCTTGCTGCCGGTTCGAGTTCCCAAACACTGCAGGAAGGATCCCGGAGATGATGAGATGCCCCGAGTGTCACCGTCACATGGAG AAGTACACTACTTTCCTATGCTGCCATGATGATGGCACTCATGGCTCGCTGTTCTAG
AA sequence Show only first row Show all	>Lus10022305 pacid=23139458 polypeptide=Lus10022305 locus=Lus10022305.g ID=Lus10022305.BGIv1.0 annot-version=v1.0 MSLRSLAAGTGANMQLIKNDRGGMLSMSDDNVMMKQVQATHAPDGREVDVRPLLNLVEDILSRATLQVDTPLLANKAHAELEDKNHQMNYVTMLDALSYT IDRISCEIAYKALGGGDAHGTTMTICETLTNYQWDAKLVLTLAAFALHYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHSGPLKPRFDALNKLIKAILE VTRCVVHFKELPPMYISHDVPALSTAMSHIPTAVYWTIRGIMAFANQITLLTTMGQQYALSTTESWELSTLEHKLANICEHLRMQLATCQQHIDEKRSVE EYKMLVDLFEMIHIDNMKVLKALIYPKDDIQPLVDGSTKRRVNIDVLRRKNVLLLISDLNISNDELSILEQIYNESRLHATRMDNQYEVVWIPLVDPSIK WNDQMQNKFESIQSTMPWYSVYHPSLIHKAVINFVRESWHFRNKPILVVLDPQGKVVSPNAIHMMWIWGSNAFPFTSRREEDLWSTEAWKLELLVNGIDP MILNWIKEEKYIFIYGGDDVEWVRKFTNSARAVATAARIPLEMVYVGKSSKREQIRRVIATITVEKLSYFWQDLTMIWFFWTRLESMLFSKIQLGKVDDH DPMMQEIKKLLSYDKEGGWAILSKGSNIISNGHGNTVLTTLVEYDLWKENIPVKGFDLSFDEHHKKIHGVTYPCCRFEFPNTAGRIPEMMRCPECHRHME KYTTFLCCHDDGTHGSLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	0	1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000548 [exp]	1.0	0.9773
AT1G67790			unknown protein		Lus10034566 [exp]	2.4	0.9662
AT3G18670			Ankyrin repeat family protein ...		Lus10027721 [exp]	3.5	0.9606
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	3.5	0.9636
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	4.6	0.9409
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	5.0	0.9590
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	6.0	0.9423
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	6.0	0.9369
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	6.9	0.9372
AT5G36930			Disease resistance protein (TI...		Lus10007811 [exp]	7.1	0.9314

Compare expression of checked genes

Lus10022305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.