Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14390 521 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 520 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 504 / 1e-179 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 427 / 4e-149 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38220 384 / 2e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 365 / 4e-126 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 347 / 1e-117 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G31020 344 / 1e-117 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 317 / 5e-107 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 296 / 6e-97 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000544 [exp] 734 / 0 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 517 / 0 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 515 / 7e-176 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035148 [exp] 428 / 3e-149 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 423 / 2e-147 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10014890 [exp] 394 / 4e-138 AT3G01690 220 / 1e-70 alpha/beta-Hydrolases superfamily protein (.1) Lus10017617 [exp] 372 / 7e-128 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 371 / 4e-127 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10036842 [exp] 351 / 1e-118 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G340000 [exp] 645 / 0 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 558 / 0 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 541 / 0 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 436 / 1e-152 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 436 / 2e-152 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 427 / 1e-148 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 416 / 2e-144 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G097300 [exp] 391 / 2e-135 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.017G117633 [exp] 389 / 2e-134 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G111400 [exp] 336 / 1e-114 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10022307 pacid=23139405 polypeptide=Lus10022307 locus=Lus10022307.g ID=Lus10022307.BGIv1.0 annot-version=v1.0 ATGGGAGGGGTGACTTCATCCATGGCGTCAAAATTTGCCTTCTTTCCCCCCAACCCACCATCATACAAGCTTGTCAAAGATGAGATGACTGGTTTGCTGC TGCTCAGCAACTTCCCTCACAGAGAAAATGTGGAAATCTTGAAGCTTCCGACCAGGAAAGGTACTGAGATTGTGGGAATGTACATAAGGCACCCCATGGC TACCTCCACTCTGCTTTACTCCCATGGCAACGCCGCCGATCTAAGTCAGATGTATGAGCTCTTCATTGAGCTCAGCATCCACTTGCGCGTCAATCTCATG GGTCTCACTTTAATGCTTCATCGTCTCATCAAGAGGCAGAACTGGGGAGCTGGGTATGACTACTCCGGATACGGACAATCATCTGGAAAGCCAAGTGAAC AGCACACATATGCAGACATAGAAGCAGCATACAAGTGTCTGGAAGAAAGCTATGGGGTCAAGCAACAAGAGATCATCCTATATGGCCAATCTGTTGGCAG CGGCCCTACTCTGGATCTCGCTGCTCGACTGCCTTATTTACGTGCTGTTGTTCTGCACAGTCCCATACTCTCGGGGTTGAGGGTCATGTATCCTGTTAAA AAATCTTACTGGTTTGACATCTACAAGAATATCGACAAGATTCAACTAGTTGATTCTCCTGTTCTTGTGATTCATGGAACTGCAGACGAAGTTGTCGATT GGTCTCATGGGAAGCAACTATGGGAACTATGCAAAGAGAAGTATGAGCCACTTTGGGTCAAAGGAGGGAGCCACTGTGATCTAGAGCACCATCCAGAGTA CATCAGGCATCTCAAGAAGTTCATATCAACCGTCGAGAAATCTCCTTCTCAAAGGTTCATCAGTTCGAGGAGGAGCACAGACCAGTTCGAGCAGCCACGG AAGAGTACAGATGTCTACGAGACTTCTTCGAGGAAAAGCACTGACCGGAGAGAGAAACCGAGACACAGCACAGACAGGGCTGAGAAGCTGAAGAAGAACC AATCATCGAACTATGCAGAGAAGTTGGAGAAGCTTAAGAGCCAGGCCAGTGCTGCTGAGAAACTGGAGAAGCTGAGGATCTCATTTGATCAAATGGAGAG GTCTAGGAGGAGTGTTGACTGCCTTGAGAAATCCAGGAAAAGCGTTGACCACCAACCGGAACGTGCAAGGAAAAGTGTTGATCGGTTGGATAGAATACGG ACTGGTTGA
AA sequence Show only first row Show all	>Lus10022307 pacid=23139405 polypeptide=Lus10022307 locus=Lus10022307.g ID=Lus10022307.BGIv1.0 annot-version=v1.0 MGGVTSSMASKFAFFPPNPPSYKLVKDEMTGLLLLSNFPHRENVEILKLPTRKGTEIVGMYIRHPMATSTLLYSHGNAADLSQMYELFIELSIHLRVNLM GLTLMLHRLIKRQNWGAGYDYSGYGQSSGKPSEQHTYADIEAAYKCLEESYGVKQQEIILYGQSVGSGPTLDLAARLPYLRAVVLHSPILSGLRVMYPVK KSYWFDIYKNIDKIQLVDSPVLVIHGTADEVVDWSHGKQLWELCKEKYEPLWVKGGSHCDLEHHPEYIRHLKKFISTVEKSPSQRFISSRRSTDQFEQPR KSTDVYETSSRKSTDRREKPRHSTDRAEKLKKNQSSNYAEKLEKLKSQASAAEKLEKLRISFDQMERSRRSVDCLEKSRKSVDHQPERARKSVDRLDRIR TG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14390			alpha/beta-Hydrolases superfam...		Lus10022307 [exp]	0	1
AT1G67190			F-box/RNI-like superfamily pro...		Lus10004875 [exp]	7.3	0.6094
AT1G78110			unknown protein		Lus10027930 [exp]	8.5	0.6456
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001437 [exp]	12.0	0.6011
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10038277 [exp]	32.7	0.5942
					Lus10039390 [exp]	33.8	0.5476
AT3G60320			Protein of unknown function (D...		Lus10042910 [exp]	38.1	0.5223
AT3G60320			Protein of unknown function (D...		Lus10028207 [exp]	42.6	0.5434
AT1G68350			unknown protein		Lus10034340 [exp]	43.7	0.5501
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10027946 [exp]	64.6	0.4986
AT4G11290			Peroxidase superfamily protein...		Lus10039681 [exp]	66.7	0.5130

Compare expression of checked genes

Lus10022307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.