Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40610 607 / 0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) AT2G40690 115 / 2e-28 SFD1, GLY1 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) AT2G41540 53 / 1e-07 GPDHC1 6-phosphogluconate dehydrogenase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014889 [exp] 777 / 0 AT5G40610 609 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10029028 [exp] 110 / 1e-26 AT2G40690 625 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10034238 [exp] 99 / 2e-22 AT2G40690 536 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10031052 [exp] 68 / 4e-12 AT2G41540 803 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10035438 [exp] 64 / 6e-11 AT2G41540 800 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10016364 [exp] 58 / 6e-09 AT3G07690 766 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Lus10019761 [exp] 57 / 2e-08 AT3G07690 744 / 0.0 6-phosphogluconate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070900 [exp] 637 / 0 AT5G40610 613 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Potri.013G090900 [exp] 118 / 3e-29 AT2G40690 612 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Potri.003G203800 [exp] 65 / 3e-11 AT3G07690 768 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.016G043400 [exp] 62 / 3e-10 AT2G41540 815 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.006G046900 [exp] 57 / 7e-09 AT2G41540 820 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF07479 [flax] [poplar] NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CL0063 [flax] [poplar] NADP_Rossmann PF01210 [flax] [poplar] NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10022308 pacid=23139470 polypeptide=Lus10022308 locus=Lus10022308.g ID=Lus10022308.BGIv1.0 annot-version=v1.0 ATGGCCCCCTCTGCCCCTGAAGATGCTTCCCACGGTGCCACATTGTTCCCCGCCAACTGCAATGGCGGCGGAGTAGACGTTTCGCCTGCCCAGAAGTCAA GGGTTACGATTATTGGTAGCGGTAATTGGGGTAGTGTGGCTTCCAAGCTCATTGCTTCCAACACCCTCAACCTCCCTTATTTCCACGATGAGGTGAGGAT GTGGGTGTTCGAGGAGACATTGCCAAGCGGTGAGAAGCTAACAGATGTCATTAACCGAACCAATGAAAATGTCAAATATCTTCCCGGGATAAAACTTGGG AAGAATGTTATTGCAGACCCAGACCTCGAGAATGCAGTGAGGGAAGCAAACATGTTGGTGTTTGTGACTCCTCACCAGTTCATGGATGGAATATGTAAGA GGCTTGTTGGTAAAGTAAAGCAAGGTGCGGAGGCTATTTCACTTATCAAAGGAATGGAGGTCAAAATGGAAGGCCCATGCATGATCTCAACTCTTATCTC TAAGCAGCTTGGTGTAAACTGCTGTGTTCTGATGGGAGCAAACATAGCAAATGAGATTGCCGTTGAGAAATTCAGTGAAGCAACTGTTGGATACAGAGAA AATAGAGAGATTGCAGAGAAGTGGGTGCAACTATTTAGCACCCCTTATTTCATGCTCACAGCTATCCAAGATGTAGAGGGAGTTGAGCTATGTGGAACCT TGAAGAATGCTGTAGCTTTGGCCGCAGGTTTCGTTGATGGTCTGGAAATGGGGAATAACACAAAGGCAGCAATTATGAGAATTGGTCTTAGGGAGATGAT GGCCTTTTCCAAGAGGTTGTTTCCCACTGTTAAGGACGATACCTTCTTCGAAAGCTGTGGTGTGGCTGATCTGATCACAACATGCTTGGGGGGAAGAAAC CGAAAAGTTGCAGAAGCTTTTGCAAAACATGGTGGGAAAAGGTCCTTTGACGAGCTAGAGGCAGAAATGTTACAGGGTCAGAAGCTACAGGGCGTTTCAA CTGCAAGAGAGGTGTACGAAGTTATGTCCAACCGTGGATGGCTAGAGATGTTCCCACTTTTGTCAGCAGTACATGAGATTAGCAGCGGCCGCCTTCCACC ATCTGCCATAGTCGAGTACGGAGAGCGCAAGCCAAAATTCTCCTGCTGA
AA sequence Show only first row Show all	>Lus10022308 pacid=23139470 polypeptide=Lus10022308 locus=Lus10022308.g ID=Lus10022308.BGIv1.0 annot-version=v1.0 MAPSAPEDASHGATLFPANCNGGGVDVSPAQKSRVTIIGSGNWGSVASKLIASNTLNLPYFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLG KNVIADPDLENAVREANMLVFVTPHQFMDGICKRLVGKVKQGAEAISLIKGMEVKMEGPCMISTLISKQLGVNCCVLMGANIANEIAVEKFSEATVGYRE NREIAEKWVQLFSTPYFMLTAIQDVEGVELCGTLKNAVALAAGFVDGLEMGNNTKAAIMRIGLREMMAFSKRLFPTVKDDTFFESCGVADLITTCLGGRN RKVAEAFAKHGGKRSFDELEAEMLQGQKLQGVSTAREVYEVMSNRGWLEMFPLLSAVHEISSGRLPPSAIVEYGERKPKFSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10022308 [exp]	0	1
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	1.0	0.9308
AT1G73930			unknown protein		Lus10042970 [exp]	2.8	0.8553
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10016877 [exp]	4.0	0.8736
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10037180 [exp]	10.0	0.8388
AT5G62170			unknown protein		Lus10031666 [exp]	13.2	0.8582
AT3G01810			unknown protein		Lus10041590 [exp]	13.3	0.8343
AT1G62950			leucine-rich repeat transmembr...		Lus10007019 [exp]	16.3	0.8217
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	16.4	0.8339
AT2G28660			Chloroplast-targeted copper ch...		Lus10005875 [exp]	17.7	0.8364
AT3G22550			Protein of unknown function (D...		Lus10012417 [exp]	19.1	0.8296

Compare expression of checked genes

Lus10022308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.