Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63180 559 / 0 Pectin lyase-like superfamily protein (.1) AT3G27400 557 / 0 Pectin lyase-like superfamily protein (.1) AT4G24780 555 / 0 Pectin lyase-like superfamily protein (.1.2) AT1G67750 542 / 0 Pectate lyase family protein (.1) AT4G13710 513 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G07010 496 / 2e-175 Pectin lyase-like superfamily protein (.1) AT5G48900 494 / 1e-174 Pectin lyase-like superfamily protein (.1) AT1G04680 494 / 2e-174 Pectin lyase-like superfamily protein (.1) AT4G13210 491 / 3e-173 Pectin lyase-like superfamily protein (.1.2) AT3G24670 481 / 4e-169 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014887 [exp] 698 / 0 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 566 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011400 [exp] 520 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10036946 [exp] 518 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 516 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10023679 [exp] 513 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10038157 [exp] 506 / 4e-179 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011758 [exp] 505 / 7e-179 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 504 / 3e-178 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G339500 [exp] 596 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 572 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G182200 [exp] 569 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.012G091500 [exp] 567 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 563 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G052300 [exp] 509 / 3e-180 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 501 / 8e-177 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 497 / 1e-175 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 492 / 1e-173 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G122000 [exp] 452 / 2e-157 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10022310 pacid=23139425 polypeptide=Lus10022310 locus=Lus10022310.g ID=Lus10022310.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTTCCACTCCTCATTCTTGCTCTCTTCTTCTTCTCTTCTCTTTACCCACATTTATCATCCGCCTCCGTCCAAGACCCAGACCTCGTAGTCG AAGATTTCCACCGAGCAATGAACGAGTCGAGAAGGAAGCTGTCCTACTTGTCCTGCGGGACAGGTAACCCCATCGACGACTGCTGGAGGTGCAACCCAAA CTGGTCAACAAACCGCCAGCGCCTAGCCGACTGCGCCATCGGGTTCGGAAAGAATGCCCTCGGCGGCCGAGACGGAAGGATTTACGTCGTCACCGATCCC AAAGACGACGACCCCGTAAACCCTAGACCAGGAACCCTACGCCACGCTGTGATCCAGGACGAGCCTTTATGGATCGTGTTCCAGCGTGACATGGTGATCA CTTTAAAACAGGAGCTGGTGATGAACTCTTTCAAGACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCCGGTGGGCCCTGCATTACGATCCACCACAC GACAAACATCATCATCCATGGGATCAACATCCACGACTGCAAGCAAGGAGGGAACGCTAACATACGCGACTCCCCACGTCACTACGGGTGGTGGACCCCG TCGGATGGAGACGGGATCTCGGTTTTCGCTAGTAGGAACATCTGGATCGACCATTGTACGATGTCCAACTGTAGGGACGGGTTGATCGACGTCATCCATG GCTCGACCGCCGTCACGATTTCCAACAACCATTTCACGCATCACGACAAAGTGATGCTTTTGGGACACCAGGACTCGTACACGGAGGATAAGAACATGCA GGTGACGGTTGCTTTCAATCATTTTGGTGAGGGTTTGGTTCAGAGGATGCCGAGGTGTAGGAATGGATATTTCCACGTGGTGAATAATGACTACACGCAC TGGGAGATGTACGCGATTGGAGGGAGCGCGTCGCCGACTATCAACAGCCAAGGGAATAGGTTCCTTGCGCCGTACGACAGGTCGAAGAAGGAAGTGACCA AGCATGAGGACGCGCCTGAGAGCGAGTGGAGGAACTGGAACTGGCGGTCTGAAGGTGACTTGCTGTTAAACGGTGCATTTTTCAGACAGTCTGGTGCTGG TGCTGGTGGTTCTTCTCATTTTGGAACATACGCAAGAGCTTCTAGCTTGAGTGCTCGCCCGGCTTCTTTCGTCGCAGCGATGACGACCACCGCCGGTGCT CTCTCCTGCCGTAGGGGTTCTCATTGCTGA
AA sequence Show only first row Show all	>Lus10022310 pacid=23139425 polypeptide=Lus10022310 locus=Lus10022310.g ID=Lus10022310.BGIv1.0 annot-version=v1.0 MASLPLLILALFFFSSLYPHLSSASVQDPDLVVEDFHRAMNESRRKLSYLSCGTGNPIDDCWRCNPNWSTNRQRLADCAIGFGKNALGGRDGRIYVVTDP KDDDPVNPRPGTLRHAVIQDEPLWIVFQRDMVITLKQELVMNSFKTIDGRGASVHVAGGPCITIHHTTNIIIHGINIHDCKQGGNANIRDSPRHYGWWTP SDGDGISVFASRNIWIDHCTMSNCRDGLIDVIHGSTAVTISNNHFTHHDKVMLLGHQDSYTEDKNMQVTVAFNHFGEGLVQRMPRCRNGYFHVVNNDYTH WEMYAIGGSASPTINSQGNRFLAPYDRSKKEVTKHEDAPESEWRNWNWRSEGDLLLNGAFFRQSGAGAGGSSHFGTYARASSLSARPASFVAAMTTTAGA LSCRRGSHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63180			Pectin lyase-like superfamily ...		Lus10022310 [exp]	0	1
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10006147 [exp]	4.4	0.8024
AT5G52390			PAR1 protein (.1)		Lus10033988 [exp]	4.9	0.7748
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	6.2	0.8014
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	7.5	0.8014
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	8.7	0.8014
					Lus10035508 [exp]	9.7	0.8014
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	10.7	0.8014
					Lus10012269 [exp]	11.5	0.8014
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	11.5	0.7786
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	11.7	0.7430

Compare expression of checked genes

Lus10022310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.