Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14370 121 / 2e-31 CCT motif family protein (.1) AT5G57180 73 / 6e-14 CIA2 chloroplast import apparatus 2 (.1.2.3) AT1G07050 70 / 6e-14 CCT motif family protein (.1) AT4G25990 71 / 2e-13 CIL CCT motif family protein (.1.2) AT1G73870 66 / 7e-12 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT1G25440 64 / 4e-11 CO COL16 B-box type zinc finger protein with CCT domain (.1) AT1G68520 64 / 4e-11 CO COL6 B-box type zinc finger protein with CCT domain (.1) AT1G49130 60 / 5e-10 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT5G57660 54 / 5e-08 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT2G24790 54 / 7e-08 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014886 [exp] 424 / 2e-147 AT5G14370 152 / 3e-42 CCT motif family protein (.1) Lus10020012 [exp] 72 / 2e-13 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10041449 [exp] 67 / 7e-12 AT1G25440 288 / 4e-93 B-box type zinc finger protein with CCT domain (.1) Lus10042431 [exp] 54 / 3e-08 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10026238 [exp] 54 / 8e-08 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10026909 [exp] 54 / 1e-07 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10020105 [exp] 54 / 1e-07 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10037636 [exp] 51 / 4e-07 AT5G57660 119 / 5e-32 CONSTANS-like 5 (.1) Lus10019899 [exp] 50 / 2e-06 AT5G02810 347 / 4e-109 pseudo-response regulator 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G339200 [exp] 150 / 1e-42 AT5G14370 174 / 5e-52 CCT motif family protein (.1) Potri.001G281700 [exp] 79 / 7e-17 AT1G07050 138 / 8e-41 CCT motif family protein (.1) Potri.009G077100 [exp] 69 / 1e-13 AT1G07050 119 / 3e-34 CCT motif family protein (.1) Potri.018G142100 [exp] 67 / 6e-12 AT5G57180 160 / 5e-44 chloroplast import apparatus 2 (.1.2.3) Potri.015G054600 [exp] 67 / 6e-12 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1) Potri.006G075200 [exp] 66 / 1e-11 AT5G57180 267 / 5e-85 chloroplast import apparatus 2 (.1.2.3) Potri.010G125100 [exp] 66 / 1e-11 AT1G25440 311 / 3e-102 B-box type zinc finger protein with CCT domain (.1) Potri.008G120400 [exp] 64 / 7e-11 AT1G25440 314 / 2e-103 B-box type zinc finger protein with CCT domain (.1) Potri.018G013800 [exp] 54 / 7e-08 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.006G173600 [exp] 54 / 8e-08 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10022311 pacid=23139504 polypeptide=Lus10022311 locus=Lus10022311.g ID=Lus10022311.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCGAATCGCAGAATCAGCTGATCGATCTCTTCCATCTCCACCCAGAGGAAACCCACCACGATCCTCCCAATGCCGACATTGACGACGAGA TTCACGGCGTCCCCGATGACCAAAACGTGGCCATTCTGCTTGAATCCGACGCCGCCGACACGTCAACCTCCCTCCACGGCCTCCTCGACACGGCGGCGGC GACGGAGGAGGAGGATCCGAGTTCTCCAAATTACTCTCTGTTCAGAGGAGAATCCCACTCCCATGGGTTCGGATCTTCGGCGGATTCGAAGTCTTTCGAG GAATCGAGCAGCTGGCTGGTGCGGACGGCAATGAGGTGTAGGGAGAGGGATCCGAGCGAGGAGAGGTGGGTGAGTTACTGCCAGGTGGTGGAGGAGCAGC AGCAGCAGAAAAAGAAGAAGAATGATAATAACAATTACAAGAAGAAGACGAGATTAGATCACGATGAGGTCACCAGCGATCCATTGGGCGTGCTGCTGAT TCAGCAGAAACAGGGCAGGAGGAAGCTGGTGGGGTTGAAGCTTGATTATCAGGAGATCTTGGATGCTTGGTCCGATAAAGGTTCTTTGTACATAGACAAC GACGGAGATATCCTACCGCCACCGCCTCCGCCGCCGCAGACGGTTCCCGATTTTCAGGATTCGGATGATCCCTCAAATGGTGGTACGATGGAAGATTGCG AGAATGCGTGGAGAGTGCCGGAAATGGAGGAGGAAGGAACAGGGGAAGGAGGAAGCAGTGCTAGTAAAGAAGGCTCCTACTGCTGGAAACAGAGAGAAGC TAGCGTCTTGAGGTACAAGGAGAAGAGACAGAACCGACTCTTCGCCAAGCGGATTCGCTATCAAGTCCGGAAGCTCAATGCCGAAAAGCGCCCCCGTTTG AAGGTATCCACCAAACCAACGCTCTTCTTCTTCTACATTACTATCATTTCTACTTTGCAAGAGAACATTGGCTTATCAGTAGACTTGTTTGTTTATGAAA TTTTGACAGGGGAGGTTCGTGAAGAGAATTGGGGAATGATGGAGCCATCAACTAACTCAAAACCTATTTTGTGGCTGCAAATAACTATGTATGAAGGATG A
AA sequence Show only first row Show all	>Lus10022311 pacid=23139504 polypeptide=Lus10022311 locus=Lus10022311.g ID=Lus10022311.BGIv1.0 annot-version=v1.0 MASSESQNQLIDLFHLHPEETHHDPPNADIDDEIHGVPDDQNVAILLESDAADTSTSLHGLLDTAAATEEEDPSSPNYSLFRGESHSHGFGSSADSKSFE ESSSWLVRTAMRCRERDPSEERWVSYCQVVEEQQQQKKKKNDNNNYKKKTRLDHDEVTSDPLGVLLIQQKQGRRKLVGLKLDYQEILDAWSDKGSLYIDN DGDILPPPPPPPQTVPDFQDSDDPSNGGTMEDCENAWRVPEMEEEGTGEGGSSASKEGSYCWKQREASVLRYKEKRQNRLFAKRIRYQVRKLNAEKRPRL KVSTKPTLFFFYITIISTLQENIGLSVDLFVYEILTGEVREENWGMMEPSTNSKPILWLQITMYEG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14370			CCT motif family protein (.1)		Lus10022311 [exp]	0	1
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	1.0	0.9277
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	3.2	0.8626
AT2G48060			unknown protein		Lus10029973 [exp]	6.6	0.8148
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10029270 [exp]	7.2	0.8045
AT5G40640			unknown protein		Lus10014575 [exp]	7.7	0.8511
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10015504 [exp]	9.6	0.8533
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	10.7	0.8433
AT3G11590			unknown protein		Lus10021324 [exp]	12.6	0.8152
AT5G36930			Disease resistance protein (TI...		Lus10039850 [exp]	13.7	0.8040
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	13.8	0.8492

Compare expression of checked genes

Lus10022311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.