Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 150 / 3e-43 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 140 / 1e-39 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT1G09930 119 / 2e-32 ATOPT2 oligopeptide transporter 2 (.1) AT4G16370 112 / 9e-30 ATOPT3 oligopeptide transporter (.1) AT5G64410 107 / 3e-28 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53520 100 / 1e-25 ATOPT8 oligopeptide transporter 8 (.1) AT4G27730 97 / 1e-24 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT4G10770 97 / 2e-24 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G53510 97 / 2e-24 ATOPT9 oligopeptide transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014885 [exp] 248 / 1e-79 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 207 / 5e-64 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10043161 [exp] 192 / 9e-59 AT4G26590 951 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 190 / 2e-57 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 186 / 4e-56 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 184 / 2e-55 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 183 / 2e-55 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 183 / 1e-54 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10004237 [exp] 161 / 1e-49 AT5G55930 509 / 6e-177 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 166 / 6e-49 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 163 / 6e-48 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 155 / 5e-45 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 147 / 2e-42 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.002G109300 [exp] 116 / 2e-31 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.005G150400 [exp] 115 / 7e-31 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.006G006000 [exp] 115 / 8e-31 AT4G16370 1284 / 0.0 oligopeptide transporter (.1) Potri.016G006500 [exp] 115 / 8e-31 AT4G16370 1305 / 0.0 oligopeptide transporter (.1) Potri.009G079500 [exp] 113 / 3e-30 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.007G056900 [exp] 100 / 7e-26 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022312 pacid=23139397 polypeptide=Lus10022312 locus=Lus10022312.g ID=Lus10022312.BGIv1.0 annot-version=v1.0 ATGCTGGCTCGCAAATATCCGGAAAAGAAATGGATCGAGTACATCCACATGCCGGTCTTCTTGTCAGGACCCTACTGGTTGCTACCTGCAAGACCAGTCC ACTTCTTGTCTTGGGGAGCCTTTGGGGTTTTTTTCAATTACTTCATTTACAGGAAGTATAAAGGATGGCGTGCTAGACATACTTACATTCTGTCAGCTGC GTTGAATGCTGGTGTTGCGTTCATGGCTGTTATGATTTACTTCACACTTCAGAGAAAGAACATCTATGGGCCAGCTTGGTGGGGTTTGCTAGCTGAAGAT CATTGTCCTTTGGCCAATTGTCCTACTGTTCCTGGCATTTCCATTGATGGATGTCCAGCAATAAACTGA
AA sequence Show only first row Show all	>Lus10022312 pacid=23139397 polypeptide=Lus10022312 locus=Lus10022312.g ID=Lus10022312.BGIv1.0 annot-version=v1.0 MLARKYPEKKWIEYIHMPVFLSGPYWLLPARPVHFLSWGAFGVFFNYFIYRKYKGWRARHTYILSAALNAGVAFMAVMIYFTLQRKNIYGPAWWGLLAED HCPLANCPTVPGISIDGCPAIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022312 [exp]	0	1
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10028105 [exp]	1.7	0.8703
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10030244 [exp]	4.5	0.8274
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	5.7	0.8461
					Lus10014515 [exp]	6.5	0.8519
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10037913 [exp]	7.7	0.7272
					Lus10020900 [exp]	8.1	0.8244
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	9.0	0.8134
AT4G26120			Ankyrin repeat family protein ...		Lus10024843 [exp]	9.6	0.7797
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	10.0	0.8115
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037089 [exp]	11.7	0.8343

Compare expression of checked genes

Lus10022312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.