Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 613 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 612 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G10770 517 / 4e-177 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G53520 494 / 1e-168 ATOPT8 oligopeptide transporter 8 (.1) AT5G64410 491 / 2e-167 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT1G09930 484 / 9e-165 ATOPT2 oligopeptide transporter 2 (.1) AT4G27730 482 / 9e-164 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT4G16370 471 / 1e-159 ATOPT3 oligopeptide transporter (.1) AT5G53510 460 / 6e-155 ATOPT9 oligopeptide transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014885 [exp] 932 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 691 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 686 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 686 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 674 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 656 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 650 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10043161 [exp] 606 / 0 AT4G26590 951 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 605 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 665 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 661 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 630 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 595 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.007G056900 [exp] 521 / 8e-179 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.003G145500 [exp] 514 / 9e-176 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019500 [exp] 497 / 2e-169 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019700 [exp] 489 / 2e-166 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.005G150400 [exp] 479 / 5e-162 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.009G079500 [exp] 476 / 6e-161 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022313 pacid=23139380 polypeptide=Lus10022313 locus=Lus10022313.g ID=Lus10022313.BGIv1.0 annot-version=v1.0 ATGGTCTCTGATGAACCTGAAGTGAACAATTATGAGCATCCAGTTGAGGAAGTAAGGCTGACGGTTTCGACATCCGACGAGCCTCGTGTCCCATCGCTTA CATTTCGAACATGGGTACTCGGGGTGATCTCGTGCCTGTTCCTGTCGTTCGTCAACCAGTTCTTCATCTTCCGGTCCAACCCGCTCTACATCGACTCTGC TTCTGTCCAGATTATGGTTCTACCACTTGGGAAGCTGATGGCTGCGACGCTTCCCAGGAAGGCGATCAATGTACCTTTGACAAAGTGGAATTTCAGTTTG AATCCTGGACCGTTCAATTTGAAAGAACACGTTCTTATAACCATATTCGCTAACTGTGGAGCTAGCGGAGCAATTGGACTTACTGTTGTTACTATCGTCA AGGCTTTCTATCACAGAGGCATCAACGTGTGGGTCGCATTGTTCATGATTCTCACAACTCAGTCTCTAGAGTATGGGTGGGCAGGAATGTTCAGAAAGTA CTTGGTTGATTCTCCACACATGTGGTGGCCTTCAAATCTAGTCCAGGTCTCTCTTTTCAGGGCATTGCATGAGAAAGAGAAGAGAGAAAAGGGTGGACAC ACAAGGCTCCAATTCTTCACTCTTGTTTGTGTATCAAGCTTTGCTTACTACATACTTCCAGGGTTTCTATTCCCTTCCCTGTCCACCATTTCATTCGTTT GTTGGATATGGAAGGACTCCGTCACCGCCCAACAGATTGGTTCGGGGATGAACGGTCTTGGTGTAGGCTCATTCGGCCTCGATTGGACTACTGTTGCAGG GTTCTTGGGAAATCCTCTAGCCACTCCATTGTTTGCAATCGTTTGCACCATGGCATGTTGCCTATTGGAGCAATGCTTTCGATTCGAGGAGGTTCCCGAT GATGTCTCAACAGACTTACAACAGTGCTGGGCAACTCTAACGGCTTCTGTTACCCATGTTGCACTGTTTTATGGGCAATCTATCTGGAAACAGTGGAAGA AGACCACAGAAGGAGTGAAAGAGGAAGTTGTGGATGTTCATACGAGAATAATGAAACAGAACTATCAAGTTGTACCTCAATGGTGGTTCATGGCGATCAT GATTGTGTCATTAGCAGTCTCTTTTCTTGCCATCGAAGGGTTCGATCGACAATTACAAATGCCGTGGTGGGCTCTCATTCTGGCTTGTGCTCTTGCATTT GCCTTCACTTTGCCTTCTGGGATTATTACTGCTACAACTAATCAGACAATTTCAATAGATATGATGGCGGAGTTGCTGATAGGATACATTTACCCGGGCA AGCCACTAGCTAATGTGACCTTCAAAGCATACAGCTTCGTCAGCATGGTTCAAGCTTTGAGTTTCCTATCAGACTTCAAATTAGGACACTATATGAAAAT CCCTCCAAAATCCATGTTCTTGGTACAGATAATTGGCACAACAGTTGGCTCCTCTGCCCAATTCGCTACGACTTGGTGGCTGATATCGAAAATCCCAAAC ATTTGTGATCTTCAGAAGCTTCCTCCGGGGAGTCCGTGGACATGTCCCGGATATGACTACTTCTACACCACTTAA
AA sequence Show only first row Show all	>Lus10022313 pacid=23139380 polypeptide=Lus10022313 locus=Lus10022313.g ID=Lus10022313.BGIv1.0 annot-version=v1.0 MVSDEPEVNNYEHPVEEVRLTVSTSDEPRVPSLTFRTWVLGVISCLFLSFVNQFFIFRSNPLYIDSASVQIMVLPLGKLMAATLPRKAINVPLTKWNFSL NPGPFNLKEHVLITIFANCGASGAIGLTVVTIVKAFYHRGINVWVALFMILTTQSLEYGWAGMFRKYLVDSPHMWWPSNLVQVSLFRALHEKEKREKGGH TRLQFFTLVCVSSFAYYILPGFLFPSLSTISFVCWIWKDSVTAQQIGSGMNGLGVGSFGLDWTTVAGFLGNPLATPLFAIVCTMACCLLEQCFRFEEVPD DVSTDLQQCWATLTASVTHVALFYGQSIWKQWKKTTEGVKEEVVDVHTRIMKQNYQVVPQWWFMAIMIVSLAVSFLAIEGFDRQLQMPWWALILACALAF AFTLPSGIITATTNQTISIDMMAELLIGYIYPGKPLANVTFKAYSFVSMVQALSFLSDFKLGHYMKIPPKSMFLVQIIGTTVGSSAQFATTWWLISKIPN ICDLQKLPPGSPWTCPGYDYFYTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022313 [exp]	0	1
AT4G03230			S-locus lectin protein kinase ...		Lus10033752 [exp]	3.2	0.7979
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039721 [exp]	4.5	0.7907
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028513 [exp]	10.0	0.7598
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10040569 [exp]	10.1	0.7732
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10028105 [exp]	12.6	0.7688
AT1G72100			late embryogenesis abundant do...		Lus10041310 [exp]	14.7	0.7104
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022312 [exp]	18.2	0.7620
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	26.0	0.7647
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015190 [exp]	26.9	0.7644
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	27.5	0.7442

Compare expression of checked genes

Lus10022313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.