Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48670 120 / 3e-32 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT1G65300 112 / 8e-30 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT1G65330 110 / 7e-29 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT5G26650 107 / 3e-27 MADS AGL36 AGAMOUS-like 36 (.1) AT5G27960 105 / 8e-27 MADS AGL90 AGAMOUS-like 90 (.1) AT3G05860 102 / 3e-26 MADS MADS-box transcription factor family protein (.1.2.3) AT5G26630 101 / 6e-26 MADS MADS-box transcription factor family protein (.1) AT5G27810 92 / 3e-23 MADS MADS-box transcription factor family protein (.1) AT1G31630 96 / 4e-23 MADS AGL86 AGAMOUS-like 86 (.1) AT2G28700 92 / 9e-22 MADS AGL46 AGAMOUS-like 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014883 [exp] 363 / 6e-128 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10022325 [exp] 237 / 3e-78 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10014578 [exp] 159 / 9e-48 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10032108 [exp] 158 / 6e-47 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10007711 [exp] 145 / 3e-44 AT5G48670 83 / 5e-20 AGAMOUS-like 80 (.1) Lus10007713 [exp] 127 / 4e-37 AT1G65330 74 / 1e-16 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10004459 [exp] 89 / 8e-23 AT5G27810 46 / 6e-08 MADS-box transcription factor family protein (.1) Lus10001689 [exp] 89 / 1e-22 AT5G27810 51 / 5e-10 MADS-box transcription factor family protein (.1) Lus10000400 [exp] 85 / 3e-21 ND 42 / 3e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G002400 [exp] 162 / 9e-49 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 137 / 1e-39 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 132 / 8e-38 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 103 / 1e-26 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.006G201700 [exp] 105 / 9e-26 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 99 / 2e-25 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.002G255700 [exp] 73 / 1e-14 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.012G109900 [exp] 72 / 2e-14 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 62 / 5e-11 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 62 / 7e-11 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10022316 pacid=23139349 polypeptide=Lus10022316 locus=Lus10022316.g ID=Lus10022316.BGIv1.0 annot-version=v1.0 ATGACTAGAAAGAAAGTGAAGCAAATGTACATAGCAAATGAGTCCGCCAGGAAGGCGACATTCAAGAAGCGGAAGAGGGGGCTGATGAAGAAAGTGATGG AGTTGAGCACCCTCTGTGGCATCCAAGCATGTGCCATCGTCAACAACCCGTTTGACGAGGCGCAGGCACCAGAGACTTGGCCACCGACTCCAGTCGGGGT CCACCAGGTGCTGACCCGCTTTAAGGAGATGCCGGAGATGGATCAGAGACAGAATATGATCAACCAGAAGGATTTCCTCAAGAACCGGATTAATAAGGCC GTTAGCCAGGGCAAGAAGTACGAAGATGAGAACCACCAGAAGGAGGTTAACCTGATGGTGATCCATTGCCTTACCGGCCGAATGGATCTCCAAGGGTTGC CCACGAGCGATTTTGAGCTTGTTTCCAAGAGCATTGACAAAAAGATCAAAGATATCGACGAACGCTTGACAAAGCTCAGCCGCAATGACGGTGGAGGAAA TGTTCTGGTGGCCCCACAAGTTGCTAGTGAGCATGATGGTGGTGGTGGTGGTGGAAATCAGGAAGAGTATGTGGAGGGTATGATGACTGATCCGGTGGCT GCAACGGCTAGGGTGGGGGATGAGTGGATGACGATGATGGATCAAAGGGTGATTACTGGCGGTAGGGATGTTGGAGAGAGTTCCTCCAATGCTGAGGCGC TATTCATTAGTAATAGTATGTCGGCGGGGAATAGTAGTGACCCTTTCTTTGGTTGGGATTTTTAA
AA sequence Show only first row Show all	>Lus10022316 pacid=23139349 polypeptide=Lus10022316 locus=Lus10022316.g ID=Lus10022316.BGIv1.0 annot-version=v1.0 MTRKKVKQMYIANESARKATFKKRKRGLMKKVMELSTLCGIQACAIVNNPFDEAQAPETWPPTPVGVHQVLTRFKEMPEMDQRQNMINQKDFLKNRINKA VSQGKKYEDENHQKEVNLMVIHCLTGRMDLQGLPTSDFELVSKSIDKKIKDIDERLTKLSRNDGGGNVLVAPQVASEHDGGGGGGNQEEYVEGMMTDPVA ATARVGDEWMTMMDQRVITGGRDVGESSSNAEALFISNSMSAGNSSDPFFGWDF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10022316 [exp]	0	1
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	3.9	0.8929
AT3G45790			Protein kinase superfamily pro...		Lus10013791 [exp]	4.9	0.8724
AT5G05180			unknown protein		Lus10034251 [exp]	6.2	0.8820
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10014642 [exp]	8.2	0.8669
AT4G33920			Protein phosphatase 2C family ...		Lus10011521 [exp]	8.9	0.8440
AT5G05180			unknown protein		Lus10029012 [exp]	9.2	0.8622
AT3G58720			RING/U-box superfamily protein...		Lus10040151 [exp]	9.9	0.8615
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	10.0	0.8634
					Lus10005747 [exp]	10.4	0.8542
AT4G38810			Calcium-binding EF-hand family...		Lus10026291 [exp]	17.4	0.8373

Compare expression of checked genes

Lus10022316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.