Plant FIBer expression Database

Lus10022317 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27390 642 / 0 unknown protein
AT5G40640 625 / 0 unknown protein
AT4G12680 407 / 7e-136 unknown protein
AT4G37030 331 / 3e-106 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032110
[exp]
818 / 0 AT3G27390 728 / 0.0 unknown protein
Lus10014575
[exp]
795 / 0 AT5G40640 714 / 0.0 unknown protein
Lus10014881
[exp]
567 / 0 AT3G27390 380 / 3e-128 unknown protein
Lus10016056
[exp]
395 / 8e-131 AT4G12680 749 / 0.0 unknown protein
Lus10025177
[exp]
395 / 8e-131 AT4G12680 738 / 0.0 unknown protein
Lus10011021
[exp]
338 / 8e-109 AT4G37030 698 / 0.0 unknown protein
Lus10001003
[exp]
332 / 1e-106 AT4G37030 707 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G338900
[exp]
730 / 0 AT5G40640 718 / 0.0 unknown protein
Potri.007G035400
[exp]
371 / 3e-122 AT4G12680 411 / 9e-138 unknown protein
Potri.007G042400
[exp]
361 / 6e-118 AT4G37030 707 / 0.0 unknown protein
Potri.014G170800
[exp]
352 / 3e-114 AT4G12680 685 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10022317 pacid=23139427 polypeptide=Lus10022317 locus=Lus10022317.g ID=Lus10022317.BGIv1.0 annot-version=v1.0
ATGGAGCGTCCAAATGGGTTTTTCTCCACCCTCTGGTCTTTTATTCTTTTTCTGCCTTTCTTCATTGGGTTGCTCCTTCTGGGTATCATTAAAGGTGTCA
TTTTATGCCCGGTGATTCTCCTTCTCATGATGACTGGAAACTTTGGTATCATATTGAGTCTTTGGCCATTTCATTTCTACCGGTCATACTATTCCATTTT
GAGTTCTGAACAACTTGGACCATTTCTAAAGCTCATACTCTGCATATGCTTGCCTGCTGTCTTGGTTATGTGGGTTGTGATTGGATTTGCTGGGAGCATC
ATTGGTGGAGCATTATATGGACTTCTTTCCCCAATATTTGCCACTTTTGATGCTGTCGGAGAAGGGAAGAGCAATACATGTTATCACTGCTTTTATGATG
GAACTATAGGCACTGTTAAAGGCTGTTTTACTATTATCAGAGACTTCGGTGACGTGTGTTTTCATTCATATTCCTCAGTTATGGATGACCTACAACAAAA
AGGGCCTGAAGATGGCAACTACTATGAGATCAGATTGCTTCAGCTTCCTGGTGCTCTCATTGCTGGTTTGCTTGGTGTTTTGGTCGACTTCCCGATCATA
TCTCTTATAGCCTTATGCAAAAGCCCATTCATGCTGTTTAGAGGATGGCAACGTTTGTTTCATGACCTTGTTGGCAGAGAAGGCCCCTTCTTGGAAACAA
TATGTGTCCCCTTCGCAGGTCTTGCAATCTTGCTGTGGCCACTGGCTGTTCTTGGAGCATTCTTGGCATCCGTTGCATCAAGCGTGGTTCTTGGTGCATA
TGCCGCAATGATTGTATATCAGGAGTCCTCTTTTTGGTTTGGACTTTGTTACATTGTTGCATCTTTGGCCATCTACGACGAGTACAGCAATGACATTCTT
GACTTGCCAGAAGGATCTTGTTTTCCAAGGCCACAATACAGGAAGAAGTCCTCCCGCTCAGCCTCCATGGAAAAGCTTACGTCTTCGTTCAAACAATCTT
TCTCGCGCTCCATGTCAGTAGCTGGTCCTACGGTCGATGTGAAACCATTTGAGCTTCTTGAGGGCTTGTTCAAGGAATGTCAAGTCCATGGAGAGAATTT
CCTCTCTCAAGGACTTATAACTCAACAAGACATTGAAGATGCCAAATCTAGTAAAGGTAGCAGAGTGATTAGCACAGGCTTACCTGCTTATTGCCTTCTT
CAAGCTCTGTTGAGATCTGCCAAAGCCAATTCTGCAGGCATTCTGTTAAAAGACAATGTCACAGAGATAACTAGCACGAATAGGCCAAAAGATGCATTTT
TCGACTGGTTTCTGAATCCATTTCTGATCATCAAAGAACAACTCAAGGCCCAGAATCTTTCCGAGTCAGAAGAGGATTACCTCTGCAAGTTAGTGCTGCT
GGGTGGTAACCCTGTCAAGTTGAAAGCTACATATATCGGCTCGCCACCAGAGACCGCGCGCAAACGAGCTGAACTCGATGCACTAGCTAGAAGGCTTCAA
GGCATTGTCAAATCAATCTCAAGGTTCCCAACCGCGAGGAGAAATTTCCAGAACCTTGTCAACAACCTATCAGAGAACCTTGACAGAAAGAAAGTGCACA
AGAAGTTTGCGCGGTCGCAAAGTGCATTTGCTAGGATCTTCAGTCAGATGTCTATGAGCGGTCCAAGCTTCAACTACAGTTCTGATACTGAGATTCATCC
GGGTGTTTCTAGGAATGTAGACATTGTATGA
AA sequence
>Lus10022317 pacid=23139427 polypeptide=Lus10022317 locus=Lus10022317.g ID=Lus10022317.BGIv1.0 annot-version=v1.0
MERPNGFFSTLWSFILFLPFFIGLLLLGIIKGVILCPVILLLMMTGNFGIILSLWPFHFYRSYYSILSSEQLGPFLKLILCICLPAVLVMWVVIGFAGSI
IGGALYGLLSPIFATFDAVGEGKSNTCYHCFYDGTIGTVKGCFTIIRDFGDVCFHSYSSVMDDLQQKGPEDGNYYEIRLLQLPGALIAGLLGVLVDFPII
SLIALCKSPFMLFRGWQRLFHDLVGREGPFLETICVPFAGLAILLWPLAVLGAFLASVASSVVLGAYAAMIVYQESSFWFGLCYIVASLAIYDEYSNDIL
DLPEGSCFPRPQYRKKSSRSASMEKLTSSFKQSFSRSMSVAGPTVDVKPFELLEGLFKECQVHGENFLSQGLITQQDIEDAKSSKGSRVISTGLPAYCLL
QALLRSAKANSAGILLKDNVTEITSTNRPKDAFFDWFLNPFLIIKEQLKAQNLSESEEDYLCKLVLLGGNPVKLKATYIGSPPETARKRAELDALARRLQ
GIVKSISRFPTARRNFQNLVNNLSENLDRKKVHKKFARSQSAFARIFSQMSMSGPSFNYSSDTEIHPGVSRNVDIV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G27390 unknown protein Lus10022317
[exp]
0 1
AT1G62050 Ankyrin repeat family protein ... Lus10003524
[exp]
3.0 0.8806
AT3G04240 SEC secret agent, Tetratricopeptid... Lus10003576
[exp]
7.1 0.8358
AT4G32780 phosphoinositide binding (.1) Lus10009508
[exp]
7.5 0.8510
AT2G19090 Protein of unknown function (D... Lus10020009
[exp]
9.0 0.8205
AT5G12080 ATMSL10, MSL10 mechanosensitive channel of sm... Lus10016423
[exp]
10.6 0.8219
AT5G62090 SLK2 SEUSS-like 2 (.1.2) Lus10000198
[exp]
10.8 0.7655
AT1G62050 Ankyrin repeat family protein ... Lus10002942
[exp]
12.5 0.8281
AT2G47850 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10035248
[exp]
14.8 0.8043
AT4G13600 Carbohydrate-binding X8 domain... Lus10032601
[exp]
16.3 0.8271
AT2G19090 Protein of unknown function (D... Lus10015534
[exp]
17.0 0.8086

Lus10022317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.