Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40650 455 / 2e-163 SDH2-2 succinate dehydrogenase 2-2 (.1) AT3G27380 443 / 6e-159 SDH2-1 succinate dehydrogenase 2-1 (.1.2) AT5G65165 315 / 5e-108 SDH2-3 succinate dehydrogenase 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014879 [exp] 523 / 0 AT5G40650 467 / 2e-168 succinate dehydrogenase 2-2 (.1) Lus10014573 [exp] 490 / 4e-177 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1) Lus10032113 [exp] 489 / 9e-177 AT5G40650 467 / 3e-168 succinate dehydrogenase 2-2 (.1) Lus10028289 [exp] 320 / 1e-109 AT5G65165 435 / 1e-154 succinate dehydrogenase 2-3 (.1) Lus10040198 [exp] 294 / 1e-99 AT5G65165 391 / 1e-137 succinate dehydrogenase 2-3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338400 [exp] 444 / 4e-159 AT5G40650 444 / 4e-159 succinate dehydrogenase 2-2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022319 pacid=23139361 polypeptide=Lus10022319 locus=Lus10022319.g ID=Lus10022319.BGIv1.0 annot-version=v1.0 ATGGCGTCCAGCTTACTGAGGCGCGGCCTTTCGCTGACCAGGACATCTCCTTCGACGGCGGCGCTGCTGGCGTCGAGGCTTGTCTCCGCTCGTCCTCACG CTTCGGAGGCGGAGGCGCAGCAGGTGGAACCGTCGGCCACCTCCGTCAAAAACTTCAAGACCTTCCAAATCTACCGTTGGAATCCGGACAATCCTTCCAA GCCGGAGCTGAAGGACTACGAAATCGACCTCAAGGAGTGCGGGCCGATGGTCCTCGACGCGCTCATCAAGATTAAAAACGAGATGGATCCGTCCTTGACC TTCCGCCGCTCCTGCCGCGAAGGTATCTGCGGCTCCTGCGCCATGAACATCGACGGCTGCAACGGCCTCGCCTGCCTCACAAAGATCTCTGCCGGGGAAC CAACCATGATCAACCCGCTGCCTCACATGTTCGTCATTAAGGATCTCGTCGTCGACATGACGAATTTCTACAACCAGTATAAGAGTATTGAGCCGTGGTT GAAGCGGAAGAGCCCCGCGGAGGTTCCAGGGAAGGAGATTCTGCAGAGCAAGAAGGATAGGTCGAAGCTTGATGGGATGTATGAGTGCATATTGTGCGCT TGCTGTAGCACTTCCTGCCCTAGCTACTGGTGGAACCCTGAGTCTTACTTGGGCCCTGCTGCTTTGCTTCATGCGAATAGATGGATAAGCGACAGCCGTG ATGAGTACACAAAGGAACGACTGGATGCGATAAACGACGAGTTTAAGCTGTACAGGTGCCATACAATCTTGAATTGTGCTCGTGCCTGCCCCAAAGGTTT GAACCCTGGGAAGCAGATCCAGAATATAAAGGGTCTTCAGATGAGCGGTGCTGCTTGA
AA sequence Show only first row Show all	>Lus10022319 pacid=23139361 polypeptide=Lus10022319 locus=Lus10022319.g ID=Lus10022319.BGIv1.0 annot-version=v1.0 MASSLLRRGLSLTRTSPSTAALLASRLVSARPHASEAEAQQVEPSATSVKNFKTFQIYRWNPDNPSKPELKDYEIDLKECGPMVLDALIKIKNEMDPSLT FRRSCREGICGSCAMNIDGCNGLACLTKISAGEPTMINPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSPAEVPGKEILQSKKDRSKLDGMYECILCA CCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLDAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKGLQMSGAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	0	1
AT1G67330			Protein of unknown function (D...		Lus10015780 [exp]	1.4	0.9442
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10037455 [exp]	2.8	0.9465
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	3.9	0.9379
AT2G03430			Ankyrin repeat family protein ...		Lus10037116 [exp]	3.9	0.9244
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027858 [exp]	3.9	0.9423
AT3G17800			Protein of unknown function (D...		Lus10017989 [exp]	5.1	0.9255
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Lus10003041 [exp]	5.5	0.9274
AT1G25370			Protein of unknown function (D...		Lus10038942 [exp]	7.5	0.9327
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	8.7	0.9227
AT4G15490		UGT84A3	UDP-Glycosyltransferase superf...		Lus10019809 [exp]	10.0	0.9056

Compare expression of checked genes

Lus10022319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.