Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01720 1180 / 0 unknown protein AT5G25265 61 / 2e-09 unknown protein AT5G13500 59 / 9e-09 unknown protein AT2G25260 53 / 6e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014878 [exp] 1632 / 0 AT3G01720 1197 / 0.0 unknown protein Lus10005347 [exp] 64 / 2e-10 AT5G25265 612 / 0.0 unknown protein Lus10041028 [exp] 62 / 6e-10 AT5G25265 618 / 0.0 unknown protein Lus10009691 [exp] 55 / 1e-07 AT5G13500 541 / 0.0 unknown protein Lus10036037 [exp] 55 / 2e-07 AT5G13500 542 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336400 [exp] 1316 / 0 AT3G01720 1215 / 0.0 unknown protein Potri.001G028100 [exp] 65 / 8e-11 AT5G13500 570 / 0.0 unknown protein Potri.003G195600 [exp] 64 / 2e-10 AT5G13500 532 / 0.0 unknown protein Potri.001G275600 [exp] 58 / 1e-08 AT5G13500 543 / 0.0 unknown protein Potri.009G070000 [exp] 57 / 2e-08 AT5G13500 515 / 0.0 unknown protein Potri.018G023100 [exp] 56 / 7e-08 AT5G25265 583 / 0.0 unknown protein Potri.006G258800 [exp] 54 / 2e-07 AT5G25265 577 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022320 pacid=23139459 polypeptide=Lus10022320 locus=Lus10022320.g ID=Lus10022320.BGIv1.0 annot-version=v1.0 ATGGCAAAAGTCACGGTCTTGATCATCTTTGCGCTGATGAGTTGGTCCCTCGTCGTCGATGGCGCCACCAGGTCGGTCGGGGAAATGGGTTATCGGATCC ACACTTTGTTCTCGGTGGAGTGCCAGAACTATTTCGACTGGGAGACAGTGGGACTCATGCACAGTTACAAGAAGGCCCAGCAACCGGGTCCCATAACCCG ACTCCTCAGCTGCACGGAGGAGGAGAAGAAGAGTTACAAAGGGATGCACTTGGCTCCCACTCTTGAAGTCCCTTCCATGAGCAGACATCCCAAGACTGGT GACTGGTACCCTGCAATTAACAAACCTGCTGGAGTTGTTCACTGGCTTGAACACAGCAAGGATGCTCAAAATGTGGATTGGGTTGTTATTCTAGATGCAG ACATGATAATTAGAGGGCCGATTATTCCTTGGGAACTTGGTGCAGAAAGAGGAAGGCCTGTGTCTGCTTATTATGGATATTTGGTTGGCTGTGATAATAT ATTGGCTAAAATCCATACGAAGCATCCTGAACTCTGTGACAAGGTCGGAGGGCTTTTAGCTATGCACATAGATGATCTTCGGGCATTAGCACCAATGTGG CTTGCGAAGACAGAAGAAGTACGTGCAGATCGGGCTCACTGGGCTACCAATATTACTGGTGACATCTACGGTAAAGGATGGATTAGTGAGATGTATGGCT ACTCGTTTGGTGCAGCTGAAGTAGGACTTCGCCATAAAATTAATGAAGACATGATGATCTACCCTGGTTACATTCCACGTCCAGGTGTTGAGCCCATTCT GTTTCACTATGGCTTGCCATTTACTGTTGGGAATTGGTCTTTTAGTAAGTTACAGCATCATGACGATGATATTGTTTATCGATGCGGTGAGCTCTTTCCT GAACCTCCATATCCGAGAGAGGTCTATTATATGGAATCTGAGCCACATAAGAGACGAGCACTGCTTCTGAGTATAGAGTGCATGAACACTTTGAACGAAG GACTCGTATTAAGGCATGCTGCAGATGGATGCCCAAAGCCAAAATGGTCGAAATACTTGAGCTTTTTAAAGAGTAAAACTTTTGCTAATCTTACTCATCC GAAAATTTCTGTTCCTGGTGACTGGCAAACTAAGGATACCAGAGAACAGCAGCATGTCGTCAGTGAACCCAATAAACCACATCCGAACATCCACACAGTT TTTTCTACAGAATGTACTCCTTACTTTGATTGGCAAACCGTTGGTCTTGTCCACAGTTTCCATCTCAGTGGCCAGCCTGGAAATATAACAAGACTTCTCA GCTGTACAGATGAAGACCTAAAGCAATACAAAGGTCACGATTTGGCTCCTACTCATTATGTCCCCTCTATGAGCCGGCATCCGCTAACTGGTGACTGGTA TCCGGCAATCAATAAACCTGCTGGGGTCCTTCATTGGCTTAACCATGCAGATAACATCGATGCTGAATATATTGTTATTCTCGATGCTGATATGATTATG AGAGGTCCAATCACACCGTGGGAGTTCAATGCATCCCGTGGTCATCCTGTATCAACTCCTTATGAGTACCTGATTGGCTGCGACAATGAGCTTGCAAAAA TGCATACAAGCCATCCGGAATACTGTGACAAGGTTGGGGGTGTAATCGTCATGCATATCGATGATCTTAGGAAGTTTGCCATGTATTGGCTGCTTAAGAC TGAGGAGGTTCGTTTTGACAAAGAGCATTACGCCACAAATCTCACTGGAGATATATATTCATCTGGCTGGATTAGTGAGATGTATGGTTACTCCTTTGGT GCTGCAGAGCTGAAACTGCGGCATATAGTGAGCCGGGAGATACTGATATATCCAGGATATGTTCCGGAAGCAGGCGTGAAGTACAGAGTTTTCCATTATG GTTTAGGATTCGGCGTCGGGAATTGGAGCTTTGACAAGGCCAATTGGAGAGACAAAGATGTTGTGAATACATGCTGGGCTAAATTTCCAGACCCACCAGA TCCTTCCACTCTCGATCGATCCAACAAGGACACTCTACAAAAGAACCTACTCAGCATAGAATGCGGTAAGAAGCTAAACGACGCGTTAATGCTGCATCAC AAGAAGAGGAAGTGCCATGACCCCGGATCTCGGACCCCATCAAAGCTGGAAACTTTAACTTCAAGGAGAATTGGAAGGAGGGTGGACAAGGTTAATGTCA GCAAGATCAGCAGTGAGGCAGTAAAGAACCATTTAAAAGTAGGGTCATCTGAAGGTGACGAAAATGATGGTCACTTCCATTCTTTGAGGATATGGGTTGT TGCTCTGTGGGCATTATCTGGTTTGGGATTCGTAGCAGTCATGAGGATGGTGTTTTCAGGCCGTAAAAGTAAGGGAACGAAAGCTAAGAGCGGTAGGAGT AGAAAAAGACATCAGAGTCAAGATAGTTGGACATGA
AA sequence Show only first row Show all	>Lus10022320 pacid=23139459 polypeptide=Lus10022320 locus=Lus10022320.g ID=Lus10022320.BGIv1.0 annot-version=v1.0 MAKVTVLIIFALMSWSLVVDGATRSVGEMGYRIHTLFSVECQNYFDWETVGLMHSYKKAQQPGPITRLLSCTEEEKKSYKGMHLAPTLEVPSMSRHPKTG DWYPAINKPAGVVHWLEHSKDAQNVDWVVILDADMIIRGPIIPWELGAERGRPVSAYYGYLVGCDNILAKIHTKHPELCDKVGGLLAMHIDDLRALAPMW LAKTEEVRADRAHWATNITGDIYGKGWISEMYGYSFGAAEVGLRHKINEDMMIYPGYIPRPGVEPILFHYGLPFTVGNWSFSKLQHHDDDIVYRCGELFP EPPYPREVYYMESEPHKRRALLLSIECMNTLNEGLVLRHAADGCPKPKWSKYLSFLKSKTFANLTHPKISVPGDWQTKDTREQQHVVSEPNKPHPNIHTV FSTECTPYFDWQTVGLVHSFHLSGQPGNITRLLSCTDEDLKQYKGHDLAPTHYVPSMSRHPLTGDWYPAINKPAGVLHWLNHADNIDAEYIVILDADMIM RGPITPWEFNASRGHPVSTPYEYLIGCDNELAKMHTSHPEYCDKVGGVIVMHIDDLRKFAMYWLLKTEEVRFDKEHYATNLTGDIYSSGWISEMYGYSFG AAELKLRHIVSREILIYPGYVPEAGVKYRVFHYGLGFGVGNWSFDKANWRDKDVVNTCWAKFPDPPDPSTLDRSNKDTLQKNLLSIECGKKLNDALMLHH KKRKCHDPGSRTPSKLETLTSRRIGRRVDKVNVSKISSEAVKNHLKVGSSEGDENDGHFHSLRIWVVALWALSGLGFVAVMRMVFSGRKSKGTKAKSGRS RKRHQSQDSWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01720			unknown protein		Lus10022320 [exp]	0	1
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	2.2	0.8725
AT3G50120			Plant protein of unknown funct...		Lus10011501 [exp]	4.2	0.8479
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10020821 [exp]	7.4	0.8012
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10022291 [exp]	11.5	0.8010
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	13.1	0.8386
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010780 [exp]	14.0	0.8131
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	14.6	0.8244
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	15.0	0.8084
AT5G48460			Actin binding Calponin homolog...		Lus10025865 [exp]	18.3	0.7809
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	20.6	0.8099

Compare expression of checked genes

Lus10022320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.