Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02990 540 / 0 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT2G44020 366 / 4e-122 Mitochondrial transcription termination factor family protein (.1) AT2G21710 117 / 6e-28 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G38160 111 / 5e-27 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT4G14605 110 / 6e-26 Mitochondrial transcription termination factor family protein (.1) AT1G78930 106 / 2e-24 Mitochondrial transcription termination factor family protein (.1) AT2G34620 72 / 8e-14 Mitochondrial transcription termination factor family protein (.1) AT5G55580 71 / 6e-13 Mitochondrial transcription termination factor family protein (.1) AT3G18870 69 / 6e-13 Mitochondrial transcription termination factor family protein (.1) AT2G03050 69 / 6e-13 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014877 [exp] 747 / 0 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 353 / 4e-117 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10004534 [exp] 233 / 1e-72 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10004535 [exp] 115 / 4e-30 AT2G44020 206 / 6e-65 Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 119 / 7e-30 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10042322 [exp] 118 / 4e-28 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10032061 [exp] 111 / 5e-26 AT4G14605 521 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10035227 [exp] 110 / 8e-26 AT4G14605 518 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10035714 [exp] 101 / 8e-23 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137400 [exp] 582 / 0 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 385 / 2e-129 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G170300 [exp] 127 / 7e-32 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.017G067600 [exp] 121 / 1e-29 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 117 / 6e-28 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 109 / 2e-26 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.007G001800 [exp] 111 / 6e-26 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 97 / 2e-21 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 73 / 7e-14 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.006G205000 [exp] 70 / 5e-13 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10022321 pacid=23139443 polypeptide=Lus10022321 locus=Lus10022321.g ID=Lus10022321.BGIv1.0 annot-version=v1.0 ATGCATTTCCTCTGCAATTTCAGTCCTGTAATGAGAATCGGAAGCTATGCAGGAGTCACCATCCCCACGCCCCTGTTCTCACATCCACAGCTCCCCCAAT ATCTCCACCGCAATCTTCAGTTAAACACAACCACGACAATCAGATGCTTAGGCCGGCAGCCTCAGTATGCTTCCGTCGCAGACTGTAGTTCGTCCTCCTC AACCTCCGAGACTTCTTCTTCTCCATCGAAAACTCGAACTCGCAAGAAGCCAGCAGGAGGAGCAGGAGGAGGTAAGTCATCTCTCTACGCTCGTCCGAGT TTGTTCGAGATGCACGAAGACAAAGTAGCGATTCGTGCCAAGGTCTACGAGTTCCTTCGGGGAATTGGAATTGTTCCAGACGAGCTCGACGGATTGGAGC TTCCCGTGACGGCAGATGTCATGAAGGAGCGTGTGGATTTCCTCCACAAATTAGGGCTCACGATCGAAGACATCAACAACTACCCGCTCGTTCTTGGCTG CAGCGTCAAGAAGAACATGATCCCTGTGCTCGACTATCTCGGCAAATTAGGGGTGAGGAAATCAACTTTCACTCATTTCTTGAGAAGGTATCCGCAGGTT CTCCACTCTAGTGTTGTTGTTGACCTTGCTCCAGTAGTGAAGTATCTTCAAGGTATGGACATTAAGCCGAATGATGTTCCTAGGGTTCTGGAGAAGTATC CTGAGGTTTTAGGGTTTAAGCTGGAAGGTACAATGAGCACATCTGTGGCTTATCTGGTTGGGATTGGGGTTGCTAGGAGGGAGATTGGTGGGCTTTTGAC TAGGTATCCTGAGATTCTAGGGATGCGGGTGGGTCGAGTTATCAAGCCATTTGTGGAGTATCTTGAGAGCTTGGGTATACCAAGGCTAGCTGTGGCTAGA TTGATAGAGAAACGACCTCACATTCTTGGGTTTGGATTGGCTGACCTGATTAAACCGAACGTCGAGGCCCTTTTCGAGTTCAATGTAAGAAAAGAGGCAG TTGCTTCGGTTGTAGCTCAGTATCCTGAGATTATTGGACTTAACCTCAAGGTCAAGCTCCATGAGCAGGTGACGCTGCTGAATTCTGTTACGGGGTTGGA ATCTGAGGATTTCGGGAGGGTAATCGAGAGGATAGAGGAGATGGATAGGCCTTTGAAGGATTTGGTTGGTTTTCCTGCATTCTTTACTTACGGTCTGGAG TCCACGGTGAAACCTAGGCATAAGAAGGTTAAAGCCAAAGGGTTGAAGTGCTCGCTATCGTGGGTTTTGAACTGCTCTGATGAGAGGTTTGACCAACGAA TGGAATACGATACCATTGGCATGGACGAGATGGAAATGCCGAGTTTTGACATGAATACGTTGATGGATTCGAGGAGTGATGATTCTGGTTCTGACTTGGA TGACAGTGATGATGATGATTATCCATGA
AA sequence Show only first row Show all	>Lus10022321 pacid=23139443 polypeptide=Lus10022321 locus=Lus10022321.g ID=Lus10022321.BGIv1.0 annot-version=v1.0 MHFLCNFSPVMRIGSYAGVTIPTPLFSHPQLPQYLHRNLQLNTTTTIRCLGRQPQYASVADCSSSSSTSETSSSPSKTRTRKKPAGGAGGGKSSLYARPS LFEMHEDKVAIRAKVYEFLRGIGIVPDELDGLELPVTADVMKERVDFLHKLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTHFLRRYPQV LHSSVVVDLAPVVKYLQGMDIKPNDVPRVLEKYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGLLTRYPEILGMRVGRVIKPFVEYLESLGIPRLAVAR LIEKRPHILGFGLADLIKPNVEALFEFNVRKEAVASVVAQYPEIIGLNLKVKLHEQVTLLNSVTGLESEDFGRVIERIEEMDRPLKDLVGFPAFFTYGLE STVKPRHKKVKAKGLKCSLSWVLNCSDERFDQRMEYDTIGMDEMEMPSFDMNTLMDSRSDDSGSDLDDSDDDDYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10022321 [exp]	0	1
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	2.6	0.9001
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	3.5	0.8869
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028706 [exp]	4.9	0.8744
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10006048 [exp]	6.2	0.8612
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	7.1	0.8968
AT3G05340			Tetratricopeptide repeat (TPR)...		Lus10015183 [exp]	8.8	0.8355
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	9.2	0.8647
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	9.9	0.8666
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	11.4	0.8860
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	11.5	0.8817

Compare expression of checked genes

Lus10022321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.