Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27670 75 / 1e-16 HSP21 heat shock protein 21 (.1) AT1G52560 54 / 8e-09 HSP20-like chaperones superfamily protein (.1.2) AT2G29500 44 / 9e-06 HSP20-like chaperones superfamily protein (.1) AT1G53540 43 / 2e-05 HSP20-like chaperones superfamily protein (.1) AT1G07400 43 / 3e-05 HSP20-like chaperones superfamily protein (.1) AT1G59860 43 / 3e-05 HSP20-like chaperones superfamily protein (.1) AT3G46230 42 / 5e-05 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT5G59720 40 / 0.0002 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT5G37670 39 / 0.0004 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT4G10250 40 / 0.0006 ATHSP22.0 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014876 [exp] 109 / 1e-30 AT4G27670 71 / 9e-16 heat shock protein 21 (.1) Lus10006444 [exp] 103 / 2e-27 AT4G27670 135 / 1e-39 heat shock protein 21 (.1) Lus10011385 [exp] 103 / 3e-27 AT4G27670 133 / 9e-39 heat shock protein 21 (.1) Lus10024225 [exp] 50 / 3e-07 AT1G52560 197 / 4e-63 HSP20-like chaperones superfamily protein (.1.2) Lus10023653 [exp] 46 / 5e-06 AT1G52560 210 / 5e-68 HSP20-like chaperones superfamily protein (.1.2) Lus10016457 [exp] 43 / 4e-05 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 43 / 4e-05 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 43 / 5e-05 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 42 / 7e-05 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053400 [exp] 137 / 2e-40 AT4G27670 141 / 2e-41 heat shock protein 21 (.1) Potri.001G192600 [exp] 57 / 6e-10 AT1G52560 191 / 8e-61 HSP20-like chaperones superfamily protein (.1.2) Potri.012G022400 [exp] 55 / 4e-09 AT4G27670 221 / 7e-73 heat shock protein 21 (.1) Potri.009G039200 [exp] 43 / 3e-05 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.010G175200 [exp] 41 / 0.0001 AT1G53540 107 / 5e-30 HSP20-like chaperones superfamily protein (.1) Potri.001G238700 [exp] 40 / 0.0002 AT1G53540 195 / 8e-65 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 40 / 0.0003 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.010G195700 [exp] 40 / 0.0004 AT5G59720 190 / 1e-62 heat shock protein 18.2 (.1) Potri.009G148000 [exp] 40 / 0.0004 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 39 / 0.0007 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10022322 pacid=23139372 polypeptide=Lus10022322 locus=Lus10022322.g ID=Lus10022322.BGIv1.0 annot-version=v1.0 ATGGCTTCCCAATTGCAGATCTACACACCCTTCCCCTCTTTGCCAGCCGCCAAAAGCATCCCTAAACTCTCATGCTCCACCTTCCCATGTCTACAGAAGA ATGGCAGGAGAGCCTCTCCCAATGCTGTCAAGGTCTTTGCTGAGAAAAGAGACAATCTTGACAACTTGCAGAGAGTAGGCAACCAACAACAACAACAACA ACAATCCCAATTGAAAACTGCTCAGCAGCCTGCATCCATTGGGGTGTGGGATAGATTCCCAACAACTACGAGGACAGTGCAGCAGATGATCGACACAATG AACAGGATCATGGATGATCCATTTGGAAGCTCCTTGTGGCCTGCAGTTTCTCCAGTTCAAGGAGATGGAGGATATGGAAGGGGAAGGATGCCTTGGGCGA TACAAGAAGCAAATGATGGAGGAGTTGCTGCTGCTGCTGATGTTGATGAAGGCTGGTCGAGTAAGAGCTATGGCAAATACAGTTTCAGAATTGCATTGCC AGACAACATCGAGTTTGAGAAGATCAAGGCAGAGGTGAAAGATGGTGTCTTGTACGTCACCATTCCTAAAGCAACCACCACCCGCAAAGTCATAGATATT GATATCGAATGA
AA sequence Show only first row Show all	>Lus10022322 pacid=23139372 polypeptide=Lus10022322 locus=Lus10022322.g ID=Lus10022322.BGIv1.0 annot-version=v1.0 MASQLQIYTPFPSLPAAKSIPKLSCSTFPCLQKNGRRASPNAVKVFAEKRDNLDNLQRVGNQQQQQQQSQLKTAQQPASIGVWDRFPTTTRTVQQMIDTM NRIMDDPFGSSLWPAVSPVQGDGGYGRGRMPWAIQEANDGGVAAAADVDEGWSSKSYGKYSFRIALPDNIEFEKIKAEVKDGVLYVTIPKATTTRKVIDI DIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10022322 [exp]	0	1
AT2G29500			HSP20-like chaperones superfam...		Lus10016458 [exp]	1.4	0.9603
AT3G13130			unknown protein		Lus10038793 [exp]	2.4	0.9555
AT1G07400			HSP20-like chaperones superfam...		Lus10040722 [exp]	2.8	0.9502
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026100 [exp]	3.0	0.9620
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10020815 [exp]	5.5	0.9204
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	7.7	0.9464
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	8.7	0.9490
AT5G07330			unknown protein		Lus10018040 [exp]	10.2	0.9050
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	10.6	0.9444
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	11.0	0.9439

Compare expression of checked genes

Lus10022322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.