Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27340 179 / 7e-59 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014875 [exp] 221 / 3e-75 AT3G27340 154 / 1e-48 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336600 [exp] 213 / 2e-72 AT3G27340 207 / 4e-70 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06155 [flax] [poplar] GBBH-like_N Gamma-butyrobetaine hydroxylase-like, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10022323 pacid=23139411 polypeptide=Lus10022323 locus=Lus10022323.g ID=Lus10022323.BGIv1.0 annot-version=v1.0 ATGCTGGGAGTACAAAGAGCTACCATGAGGGCAATCCAAACAAGCGTTGCCGGTCCGCGGCTCACTAAATTCACTCTTCGAGCGCCCAAACGAGTAGAAG TGGAATATGGGAATGGTGACAAGTTTAGCCTGTCAGCCGAATTTTTAAGAATCCACAGCCCTGCCGTTGATGGGAAAGTTAGGTCAATTGGTGGTGAAAA GGTGATATCAGGGCGTCGTCATGTAGGAATAATTTCTGCAGAACCTGTAGGAAACTATGGGGTAAGGATAGTGTTTGATGATCTGCATAAAACTGGGATC TTTACCTGGGACTATTTCTTTCATCTGGGAATCAACAAATTCTCCTTGAGCAGAGACTATATCAGGACATTGAAGAGGCATGGACTTAGCCGCGATCCAG CAAGGAGACGTTCACCTTCCTGA
AA sequence Show only first row Show all	>Lus10022323 pacid=23139411 polypeptide=Lus10022323 locus=Lus10022323.g ID=Lus10022323.BGIv1.0 annot-version=v1.0 MLGVQRATMRAIQTSVAGPRLTKFTLRAPKRVEVEYGNGDKFSLSAEFLRIHSPAVDGKVRSIGGEKVISGRRHVGIISAEPVGNYGVRIVFDDLHKTGI FTWDYFFHLGINKFSLSRDYIRTLKRHGLSRDPARRRSPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27340			unknown protein		Lus10022323 [exp]	0	1
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039548 [exp]	7.4	0.8780
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	8.7	0.8915
AT2G30270			Protein of unknown function (D...		Lus10042235 [exp]	11.4	0.8847
AT4G10170			SNARE-like superfamily protein...		Lus10002944 [exp]	11.4	0.8923
AT1G59600		ZCW7	ZCW7 (.1)		Lus10018676 [exp]	12.5	0.8855
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10024962 [exp]	12.8	0.8553
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	13.2	0.8924
AT3G58670			Protein of unknown function (D...		Lus10033603 [exp]	16.1	0.8548
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	20.1	0.8785
AT3G50520			Phosphoglycerate mutase family...		Lus10014360 [exp]	23.7	0.8556

Compare expression of checked genes

Lus10022323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.