Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27330 215 / 5e-62 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G18660 80 / 6e-16 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT4G08590 48 / 7e-06 VIM6, ORTHL, ORL1 VARIANT IN METHYLATION 6, ORTHRUS-LIKE 1, ORTH-LIKE 1, ORTHRUS-like (.1.2) AT3G07200 45 / 2e-05 RING/U-box superfamily protein (.1.2) AT2G38920 46 / 3e-05 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT1G74990 44 / 4e-05 RING/U-box superfamily protein (.1) AT2G32950 45 / 7e-05 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G48655 44 / 7e-05 RING/U-box superfamily protein (.1.2.3) AT3G26730 44 / 0.0002 RING/U-box superfamily protein (.1) AT1G66040 44 / 0.0002 ORTH4, VIM4 VARIANT IN METHYLATION 4, ORTHRUS 4, Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032119 [exp] 299 / 2e-98 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10014874 [exp] 106 / 3e-28 AT3G27330 86 / 3e-21 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10015722 [exp] 79 / 1e-15 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 79 / 2e-15 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10022569 [exp] 51 / 4e-07 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10022774 [exp] 45 / 2e-05 AT5G48655 153 / 7e-47 RING/U-box superfamily protein (.1.2.3) Lus10015986 [exp] 45 / 5e-05 AT2G38920 389 / 1e-135 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10012290 [exp] 45 / 5e-05 AT2G38920 392 / 5e-137 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10039127 [exp] 45 / 8e-05 AT5G39550 776 / 0.0 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336832 [exp] 300 / 1e-98 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G068100 [exp] 77 / 3e-15 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.016G064600 [exp] 50 / 1e-06 AT2G38920 414 / 2e-145 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.003G162400 [exp] 49 / 4e-06 AT1G57820 813 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.001G067700 [exp] 49 / 4e-06 AT1G57820 811 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.006G198600 [exp] 48 / 9e-06 AT2G38920 390 / 3e-136 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.001G082200 [exp] 47 / 1e-05 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) Potri.014G191400 [exp] 45 / 5e-05 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3) Potri.003G148300 [exp] 45 / 5e-05 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.016G058300 [exp] 45 / 8e-05 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10022324 pacid=23139407 polypeptide=Lus10022324 locus=Lus10022324.g ID=Lus10022324.BGIv1.0 annot-version=v1.0 ATGTCCGATCACGACCCCGTACGTAGCGGCTCAGACAACGGCCGGACTCCGAGGGAAGGGAACACGAGCAGAAATGCCGCTTCCTCACAGAACTTAGAGA CGCTGTTGAGCCCAAGGTTCAAGTCCGTGGCGGCAATGGCTGGATGGGACGAAGAGTCAATTCTGATCGCCAGCCTTATAGTGGAAGACACCCCTGATCG AGATTTCAAGCAAAGGAAGAGATCCGATCCCCTTTTCAAGACTCCCCCTTCTACTAATTCCAGGAGGAAGCGTAGGATCCAGAGGAGGAGTCCTTTCTCA ATTCCTGTGACTGTTCTTAATCTTGACGAAGAAGAACCACCCTCCTCCAAACCTGAAGTGAGTGCCAAGAAGAAGATCGAAGCGAAAGTGGTAGTTAATG AAGAAGAAAAGAAAGCCGAGAAAGATGATGCGAACAAAGAAAATTCCATGGCTTCATGCTCAAATGGTGTACTTCCATGCTTGGATAAGCTTAGAGAAGA GCTTTCCTGCGCTATATGTTTGGAGATTTGCTATGAACCTAGTACCACATCTTGTGGGCACAGCTTCTGTAAGAAATGTTTGAGATCTGCTGCTGATAAA TGTGGGAAGAAGTGTCCCAAGTGTAGACAACTAATAAGCAATGGGAGATCTTGCACTGTGAACACAGTTCTTTGGAACACAATACAGCTTCTATTTCCAA AAGAAGTGGAAGCAAGGAAGGCATCACCTGGGACATTGAACAGCCGAGATCGTGAGACCCCTCACCAAGAAAGAGTCAACAGCAATGAGACAAGGAGGTC TAGTAGAGGTGTCAATCCTAGTAGACAAGGAAGGCCATCGGGATCTGGCCAGGCTCAGAATCAGGAGGATACTGGAATTCCACAGAGAACGGTTCCAAGA GGCGAGTTTATGTGGTTATCAAGCCGGAATGTTGAACGACTTGAGAGGGGAGGAGGAAGAGCAGTAGCAGCAAATGGAAATGAAGATTCGTCACTGGCGA GAAGGGTGCAAAGAGGAGAGGAGCTGGCAAGGTTATTAAGAAGAGAGGCAGCAGCAAGTAGTGGAAGAAGAACAAGACCAAGTCAAGATGGAGATGCTGC TTTAGCATTACGGCTTCAGAGGCAAGAGTTCATGGGAGGTTTTAGGGAGACTGAAGATCGATCAGGAAGACGTCTGTTGGCTGCTAGAGAAAACTTGAGA GCCATGGCATCTAGAGCGGTTAATGTCCGGTCCAGGGTAGAGAATCTGTAA
AA sequence Show only first row Show all	>Lus10022324 pacid=23139407 polypeptide=Lus10022324 locus=Lus10022324.g ID=Lus10022324.BGIv1.0 annot-version=v1.0 MSDHDPVRSGSDNGRTPREGNTSRNAASSQNLETLLSPRFKSVAAMAGWDEESILIASLIVEDTPDRDFKQRKRSDPLFKTPPSTNSRRKRRIQRRSPFS IPVTVLNLDEEEPPSSKPEVSAKKKIEAKVVVNEEEKKAEKDDANKENSMASCSNGVLPCLDKLREELSCAICLEICYEPSTTSCGHSFCKKCLRSAADK CGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPKEVEARKASPGTLNSRDRETPHQERVNSNETRRSSRGVNPSRQGRPSGSGQAQNQEDTGIPQRTVPR GEFMWLSSRNVERLERGGGRAVAANGNEDSSLARRVQRGEELARLLRREAAASSGRRTRPSQDGDAALALRLQRQEFMGGFRETEDRSGRRLLAARENLR AMASRAVNVRSRVENL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10022324 [exp]	0	1
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	2.6	0.9674
AT4G01730			DHHC-type zinc finger family p...		Lus10009971 [exp]	3.0	0.9604
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10025718 [exp]	4.5	0.9601
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	4.7	0.9606
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	7.3	0.9590
AT3G01015			TPX2 (targeting protein for Xk...		Lus10030836 [exp]	7.9	0.9493
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	8.8	0.9543
AT1G49870			unknown protein		Lus10002116 [exp]	8.9	0.9569
AT5G42330			unknown protein		Lus10013229 [exp]	9.5	0.9512
AT1G72250			Di-glucose binding protein wit...		Lus10005582 [exp]	9.9	0.9575

Compare expression of checked genes

Lus10022324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.