Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05860 112 / 3e-30 MADS MADS-box transcription factor family protein (.1.2.3) AT1G65300 113 / 5e-30 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT1G65330 111 / 4e-29 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT5G48670 110 / 2e-28 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT5G26650 103 / 1e-25 MADS AGL36 AGAMOUS-like 36 (.1) AT5G27960 97 / 2e-23 MADS AGL90 AGAMOUS-like 90 (.1) AT5G27810 88 / 6e-22 MADS MADS-box transcription factor family protein (.1) AT1G31640 93 / 2e-21 MADS AGL92 AGAMOUS-like 92 (.1) AT5G26630 88 / 5e-21 MADS MADS-box transcription factor family protein (.1) AT1G31630 91 / 6e-21 MADS AGL86 AGAMOUS-like 86 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014883 [exp] 286 / 2e-97 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10022316 [exp] 258 / 9e-87 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10014578 [exp] 166 / 2e-50 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10032108 [exp] 158 / 6e-47 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10007711 [exp] 139 / 1e-41 AT5G48670 83 / 5e-20 AGAMOUS-like 80 (.1) Lus10007713 [exp] 116 / 7e-33 AT1G65330 74 / 1e-16 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10022107 [exp] 90 / 3e-22 ND 71 / 6e-16 Lus10001689 [exp] 87 / 7e-22 AT5G27810 51 / 5e-10 MADS-box transcription factor family protein (.1) Lus10004150 [exp] 90 / 8e-21 AT1G65330 84 / 8e-19 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G002400 [exp] 148 / 5e-43 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 128 / 6e-36 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 119 / 1e-32 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 91 / 6e-22 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.006G201700 [exp] 92 / 5e-21 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 83 / 1e-19 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.012G109900 [exp] 71 / 7e-14 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.002G255700 [exp] 71 / 9e-14 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 66 / 2e-12 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 63 / 2e-11 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10022325 pacid=23139431 polypeptide=Lus10022325 locus=Lus10022325.g ID=Lus10022325.BGIv1.0 annot-version=v1.0 ATGAAGCTAGTGTACATAGAAGACAAGTCAGCAAGGAAGGCGACATTCACAAAGCGGAAGAAGGGGGTGATGAAGAAAGTGAGAGAGCTAAGCACCCTTT GCGGCATCCAGGCTTGCGCCATTGTCAATAACCCGTTCGACAAGACACAACCGCCAGAAACTTGGCCGCCGACACTAGGAGAGGTCCACCAGGTGCTGAA CCGCTTCAAGAATATGCCAACGGTGAACCAGCGAAAAAAGATGGTCAGCCAGGAGAAGTTCCTCATCGACCGTATCAAGAAGACCGCCGACCAGACCAAC AAGTATTACCATGACAACTGCCAGAAGGAGGTCGACTTGGCGGTGACCCACTGCCTCACTGGCCGAATGGAGCTCACGGGGTTGACCTTGAATGATTATG ATCTGATTTCTCAGGGCATTAACCGGAAGATTCAGGGGATTGATCAGCGCCTGGCAGAGCTCAGTCGTGGCGATGACCGAAGAAATGCCCAGGTGGCCCC ACAAGTGGCTAATTATCATGGTAATGGTGGTGGTGGTGATGTGCAGGGTATGGATGGGCAGCATCTTTTGACGGAGGCGATGATGAATCCGACGGCAGCA TCAGCGCCCGCGATAGAGGACGAGTTGATGACGATGCTAATGATGATGCAGCAGGGGTCTGGTACCGGCGACAATAGGGGTGTTGGAGAGAGCTCCTCCA ATGTTGAGGCGATGTCAATTAGTAATAGTAATTCGGTGTGGTCTAATAGCGATCCTTTCTTTGATTGGGATTTTTAA
AA sequence Show only first row Show all	>Lus10022325 pacid=23139431 polypeptide=Lus10022325 locus=Lus10022325.g ID=Lus10022325.BGIv1.0 annot-version=v1.0 MKLVYIEDKSARKATFTKRKKGVMKKVRELSTLCGIQACAIVNNPFDKTQPPETWPPTLGEVHQVLNRFKNMPTVNQRKKMVSQEKFLIDRIKKTADQTN KYYHDNCQKEVDLAVTHCLTGRMELTGLTLNDYDLISQGINRKIQGIDQRLAELSRGDDRRNAQVAPQVANYHGNGGGGDVQGMDGQHLLTEAMMNPTAA SAPAIEDELMTMLMMMQQGSGTGDNRGVGESSSNVEAMSISNSNSVWSNSDPFFDWDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65300	MADS	AGL38, PHE2	PHERES2, AGAMOUS-like 38 (.1)		Lus10022325 [exp]	0	1
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10008170 [exp]	4.7	0.9468
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10022463 [exp]	5.5	0.9408
AT3G24170		ATGR1	glutathione-disulfide reductas...		Lus10000758 [exp]	6.9	0.9473
AT1G11320			unknown protein		Lus10017280 [exp]	8.2	0.9431
AT2G37470			Histone superfamily protein (....		Lus10023753 [exp]	11.9	0.9200
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	15.7	0.9440
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10038013 [exp]	16.7	0.9163
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	27.4	0.9395
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	28.0	0.9391
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	30.0	0.9369

Compare expression of checked genes

Lus10022325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.