Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27320 645 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14310 625 / 0 ATCXE16 carboxyesterase 16 (.1) AT3G63010 132 / 3e-34 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 128 / 4e-33 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 123 / 3e-31 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 107 / 9e-26 ATCXE20 carboxyesterase 20 (.1) AT2G45600 103 / 3e-24 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 103 / 3e-24 ATCXE17 carboxyesterase 17 (.1) AT2G45610 102 / 8e-24 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 102 / 1e-23 ATCXE18 carboxyesterase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036931 [exp] 427 / 1e-147 AT3G27320 476 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10037056 [exp] 427 / 2e-147 AT3G27320 476 / 5e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 133 / 7e-35 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002254 [exp] 132 / 3e-34 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10000928 [exp] 130 / 8e-34 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10013774 [exp] 130 / 1e-33 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10008439 [exp] 127 / 8e-33 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10039162 [exp] 122 / 6e-31 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10015989 [exp] 115 / 1e-28 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G180600 [exp] 499 / 8e-176 AT3G27320 568 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G053700 [exp] 496 / 9e-175 AT3G27320 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G180500 [exp] 490 / 2e-172 AT3G27320 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G040600 [exp] 139 / 5e-37 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 139 / 1e-36 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 127 / 1e-32 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 126 / 2e-32 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G192650 [exp] 125 / 4e-32 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.002G213100 [exp] 123 / 3e-31 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192600 [exp] 123 / 3e-31 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10022326 pacid=23139498 polypeptide=Lus10022326 locus=Lus10022326.g ID=Lus10022326.BGIv1.0 annot-version=v1.0 ATGCCGAGCGTGGCGGTGAAGTTGTACAGTGTGTTCTTCAAGTTCCTCTTCAAACACCGCTTGCAGTCTCGGATTCACAGCCCCGTCGACCCTCATTCCA ACAACGCTTCTTACGGCGTCACCACCCGACCCGACGAGTCCGTCGTTTCTGCCAACCCTTCCTTCGCCGCCGACGGTGTTGCCACCAAGGATATTCACAT CGATCCCTCCACTTCCCTCTCTATCCGGATCTTCCTCCCTGACTCCGCTCTCAACCCGCTCGATCCAGATCCCAAGCTTGCTCCTAAGCTCAACCACAAC AAGCTTCCCCCCTCGCGATCCGTCTCCGATCTCGATCACAACGACATCGACATTTTGAATGGCAGTCTCCGGCAACAGCATAGTTTGAGGAGGAGCAGCA TCGGCCCCATTCCAACACCTGCTGCTCGTTCCGGGAGTTTTGAGGACTCGAGGAGGAACAGTTATGGTTGTAGCATCGACTCGGATGCATTGCAGTTGAT GATGAAGTCCGACGGTGGAGGTTACAGGGGTTACGCGCCCTCGACGAATAAGTCCCGGAGGTTGCCCATAATGGTGCAGTTCCACGGCGGGGGGTGGGTG AGCGGAGGGAATGATTCAGTGGCGAATGATTTGTTTTGTAGAAGGATTGCCAAACTCTGCGACGTCATTGTGGTGGCCGTTGGTTACAGGTTGGCTCCTG AGAATAGGTATCCGGCGGCGTTTGAGGATGGGATGACGGTATTGAATTGGTTGGGGAAGCAAGCGAATTTGGCGGAATGTAGCAAATCAATGGGGAGTGC TACCGGGTTTGCCACAGAGTTTAAGAGGGCTGATAGTCGTAGGCACATTGTTGATGGGTTTGGAGCATCAGTTGTGGAACCCTGGTTAGCAGCCCATGCT GATCCTTCCAGATGTGTACTTCTTGGAGTGAGCTGCGGTGGTAATATAGCAGACTACGTAGCTAGGAAAGCTGTGGAGGTAGGCAGGCGTCTGGATCCTG TGAAGGTTGTAGCCCAAGTATTGATGTACCCATTCTTCGTTGGGAGTGTGCCAACACACTCCGAGATAAAGTTGGCGAACTCTTACTTCTATGACAAATC GATGTGCATGCTCGCATGGAAACTCTTCCTACCAGAGGAGGACTTCAGTCTGGATCACCCAGCTGCCAACCCTCTTGTTCCTGGGAGAGGACCTCCCTTG AAACTCATGCCACCTACCCTTACAGTGGTTGCAGAACATGACTGGATGAGGGACAGAGCCATTGCTTATTCGGAGGAGTTGAGGAAAGTGAATGTAGATG CTCCTGTTCTAGAATACAAGGATGCGGTTCATGAATTTGCAACCCTGGACATGCTTCTGAAGACACCACAGGCCCAAGCCTGTGCGGAGGACATTGCCAT ATGGGTGAAGAAGTACATCTCGTTTCGAGGTCATGAGTTTTCCTATTAG
AA sequence Show only first row Show all	>Lus10022326 pacid=23139498 polypeptide=Lus10022326 locus=Lus10022326.g ID=Lus10022326.BGIv1.0 annot-version=v1.0 MPSVAVKLYSVFFKFLFKHRLQSRIHSPVDPHSNNASYGVTTRPDESVVSANPSFAADGVATKDIHIDPSTSLSIRIFLPDSALNPLDPDPKLAPKLNHN KLPPSRSVSDLDHNDIDILNGSLRQQHSLRRSSIGPIPTPAARSGSFEDSRRNSYGCSIDSDALQLMMKSDGGGYRGYAPSTNKSRRLPIMVQFHGGGWV SGGNDSVANDLFCRRIAKLCDVIVVAVGYRLAPENRYPAAFEDGMTVLNWLGKQANLAECSKSMGSATGFATEFKRADSRRHIVDGFGASVVEPWLAAHA DPSRCVLLGVSCGGNIADYVARKAVEVGRRLDPVKVVAQVLMYPFFVGSVPTHSEIKLANSYFYDKSMCMLAWKLFLPEEDFSLDHPAANPLVPGRGPPL KLMPPTLTVVAEHDWMRDRAIAYSEELRKVNVDAPVLEYKDAVHEFATLDMLLKTPQAQACAEDIAIWVKKYISFRGHEFSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	0	1
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	1.0	0.9553
AT2G14835			RING/U-box superfamily protein...		Lus10002131 [exp]	1.7	0.9042
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	2.8	0.9127
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10024002 [exp]	3.5	0.9022
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	4.0	0.8825
AT1G05520			Sec23/Sec24 protein transport ...		Lus10041256 [exp]	5.9	0.8840
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10000903 [exp]	6.3	0.8746
AT5G64970			Mitochondrial substrate carrie...		Lus10014334 [exp]	6.6	0.8731
AT3G57890			Tubulin binding cofactor C dom...		Lus10016279 [exp]	7.3	0.8619
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	7.9	0.8788

Compare expression of checked genes

Lus10022326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.