Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40810 472 / 2e-169 Cytochrome C1 family (.1.2) AT3G27240 468 / 1e-167 Cytochrome C1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022328 [exp] 552 / 0 AT5G40810 504 / 0.0 Cytochrome C1 family (.1.2) Lus10041579 [exp] 461 / 6e-165 AT3G27240 424 / 4e-150 Cytochrome C1 family (.1) Lus10041577 [exp] 370 / 1e-130 AT5G40810 343 / 5e-121 Cytochrome C1 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203800 [exp] 495 / 2e-178 AT5G40810 479 / 3e-172 Cytochrome C1 family (.1.2) Potri.009G165000 [exp] 491 / 4e-177 AT5G40810 511 / 0.0 Cytochrome C1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0318 [flax] [poplar] Cytochrome-c PF02167 [flax] [poplar] Cytochrom_C1 Cytochrome C1 family
Representative CDS sequence Show only first row Show all	>Lus10022327 pacid=23139464 polypeptide=Lus10022327 locus=Lus10022327.g ID=Lus10022327.BGIv1.0 annot-version=v1.0 ATGGCTGGAGGAGGAGTTATTCGCCAGCTTTTACAGAGGAAACTCCAGTCTCAAACTATGGTCCCTTCAGTTTCGTCTATCTTAAATTCGAGGAAAGGTC AAGAAGATGCTGGATCGTTCGGCGAAAAGTCCATAAGAGCAATTGCACTACTCGGCGTTGGCCTTTCGGGGCTCCTAGGTTCTGCAGTTGCATCTGCTTC TGATGAGGCTGAACATGGTTTAGCTTCACCAAACTATCCATGGCCTCACAGTGGTATTCTGAGTTCTTATGACCATGCTTCGATTCGTCGTGGTCACCAG GTCTATCAGCAAGTTTGTGCTTCCTGCCACTCTATGTCTCTTATCTCATACCGCGATCTGGTGGGTGTGGCATACACCGAAGAGGAAGCAAAGGCTATGG CTGCTGAGATAGAGGTTGAAGATGGTCCCAATGATGAAGGCGAGATGTTTACTCGCCCAGGAAAACTAAGTGACCGGTTTCCTCAGCCTTATGCAAACGA GTCTGCTGCTAGATTCGCTAACGGAGGGGCCTATCCCCCGGATCTGAGCCTTATCACAAAAGCTCGTCACAATGGCCAGAACTACGTGTTTGCCCTTTTA ACTGGATATCGTGATCCTCCTGCTGGAATTTCGATTCGTGAGGGCCTGCACTACAATCCATACTTCCCTGGTGGAGCTATTGCAATGCCGAAGATGCTGA ATGACGGTGCTGTTGAGTATGAAGATGGCACCCCAGCTACTGAAGCTCAGATGGGCAAAGATGTCGTATCGTTCTTGTCATGGGCTGCAGAACCAGAAAT GGAAGAGAGGAAACTGATGGGGTTCAAGTGGATATTCCTATTGTCATTGGCATTGCTTCAAGTTGGTTATCACCGACGTATGAGGTGGTCAGTTCTGAAA TCTCGCAAGTTGATTGTCGATGTTGTCAACTAA
AA sequence Show only first row Show all	>Lus10022327 pacid=23139464 polypeptide=Lus10022327 locus=Lus10022327.g ID=Lus10022327.BGIv1.0 annot-version=v1.0 MAGGGVIRQLLQRKLQSQTMVPSVSSILNSRKGQEDAGSFGEKSIRAIALLGVGLSGLLGSAVASASDEAEHGLASPNYPWPHSGILSSYDHASIRRGHQ VYQQVCASCHSMSLISYRDLVGVAYTEEEAKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGQNYVFALL TGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFLLSLALLQVGYHRRMRWSVLK SRKLIVDVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40810			Cytochrome C1 family (.1.2)		Lus10022327 [exp]	0	1
AT1G80230			Rubredoxin-like superfamily pr...		Lus10011494 [exp]	3.5	0.8872
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Lus10041739 [exp]	4.0	0.9102
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	5.8	0.9109
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040885 [exp]	10.1	0.9074
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10024267 [exp]	16.9	0.8765
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	18.2	0.8795
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	20.5	0.8979
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10028892 [exp]	21.0	0.8927
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	21.2	0.9074
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	23.8	0.8493

Compare expression of checked genes

Lus10022327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.