Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40810 471 / 2e-168 Cytochrome C1 family (.1.2) AT3G27240 466 / 2e-166 Cytochrome C1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022327 [exp] 552 / 0 AT5G40810 506 / 0.0 Cytochrome C1 family (.1.2) Lus10041579 [exp] 459 / 2e-163 AT3G27240 424 / 4e-150 Cytochrome C1 family (.1) Lus10041577 [exp] 369 / 9e-130 AT5G40810 343 / 5e-121 Cytochrome C1 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203800 [exp] 494 / 1e-177 AT5G40810 479 / 3e-172 Cytochrome C1 family (.1.2) Potri.009G165000 [exp] 491 / 2e-176 AT5G40810 511 / 0.0 Cytochrome C1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0318 [flax] [poplar] Cytochrome-c PF02167 [flax] [poplar] Cytochrom_C1 Cytochrome C1 family
Representative CDS sequence Show only first row Show all	>Lus10022328 pacid=23139364 polypeptide=Lus10022328 locus=Lus10022328.g ID=Lus10022328.BGIv1.0 annot-version=v1.0 ATGGCCTTGAATCGATTGAGCGTTACTTCTTCAGAAAGAGTGTGCTTCGGAGCGAACCTGATAGTCGGTAAAATGGTTGGAGGAGGAGTTATTCGCCAGC TTTTACAGAGGAAACTCCAGTCTCACACTGTGGTCCCTTCAGTTTCGTCTATCTTAAATTCGAGGAAAGGTCAAGAAGATGCTGGATCGTTCGGCGAAAA GTCCATAAGAGCAATTGCACTGCTCGGCGTTGGCCTTTCAGGGCTCCTAGGTTCTGCAGTTGCATCTGCTTCTGATGAGGCTGAACATGGTTTAGCTTCA CCAAACTATCCATGGCCTCACAGTGGTATTCTGAGTTCTTATGACCATGCTTCGATTCGTCGTGGTCACCAGGTCTATCAGCAAGTTTGTGCTTCCTGCC ACTCTATGTCTCTTATCTCATACCGTGATTTGGTGGGTGTGGCATACACCGAAGAGGAAGCAAAGGCTATGGCTGCTGAGATAGAGGTTGAAGATGGTCC CAATGATGAAGGCGAGATGTTTACTCGCCCTGGAAAACTAAGTGACCGATTTCCTCAGCCTTATGCAAACGAGTCTGCTGCTAGATTCGCTAACGGAGGG GCCTATCCCCCGGATCTCAGCCTTATCACAAAAGCTCGTCACAATGGCCAGAACTACGTGTTTGCCCTTTTAACTGGATATCGTGATCCTCCTGCTGGAA TTTCGATTCGTGAGGGCCTGCACTACAATCCATACTTCCCTGGTGGAGCTATTGCAATGCCGAAGATGCTGAATGATGGTGCTGTTGAGTATGAAGATGG CACCCCAGCTACTGAAGCTCAGATGTGCAAAGATGTCGTATCGTTCTTGTCATGGGCTGCAGAACCAGAAATGGAAGAGAGGAAACTGATGGGTTTCAAG TGGATATTCCTACTGTCATTGGCATTGCTTCAAGTTGGGTATCACCGACGCATGAGGTGGTCAGTTCTGAAATCTCGCAAGTTGATTGTCGATGTTGTCA ACTAA
AA sequence Show only first row Show all	>Lus10022328 pacid=23139364 polypeptide=Lus10022328 locus=Lus10022328.g ID=Lus10022328.BGIv1.0 annot-version=v1.0 MALNRLSVTSSERVCFGANLIVGKMVGGGVIRQLLQRKLQSHTVVPSVSSILNSRKGQEDAGSFGEKSIRAIALLGVGLSGLLGSAVASASDEAEHGLAS PNYPWPHSGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEAKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGG AYPPDLSLITKARHNGQNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMCKDVVSFLSWAAEPEMEERKLMGFK WIFLLSLALLQVGYHRRMRWSVLKSRKLIVDVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40810			Cytochrome C1 family (.1.2)		Lus10022328 [exp]	0	1
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10036456 [exp]	1.0	0.8741
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	2.0	0.8737
AT1G80230			Rubredoxin-like superfamily pr...		Lus10011494 [exp]	7.1	0.8283
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10005461 [exp]	13.9	0.8248
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10035360 [exp]	14.7	0.7627
AT2G46170			Reticulon family protein (.1.2...		Lus10036405 [exp]	14.9	0.8321
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	18.0	0.7962
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	20.3	0.8301
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	21.4	0.7557
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	28.4	0.7931

Compare expression of checked genes

Lus10022328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.