Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01750 610 / 0 Ankyrin repeat family protein (.1) AT3G04140 460 / 2e-153 Ankyrin repeat family protein (.1) AT1G03670 76 / 3e-14 ankyrin repeat family protein (.1) AT5G02620 76 / 5e-14 ATANK1, ANK1 ankyrin-like1 (.1) AT5G51160 73 / 2e-13 Ankyrin repeat family protein (.1) AT2G31820 72 / 5e-13 Ankyrin repeat family protein (.1) AT1G05640 70 / 3e-12 Ankyrin repeat family protein (.1) AT1G07710 69 / 6e-12 Ankyrin repeat family protein (.1) AT4G10720 69 / 6e-12 Ankyrin repeat family protein (.1.2) AT3G12360 64 / 3e-10 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041582 [exp] 1242 / 0 AT3G01750 635 / 0.0 Ankyrin repeat family protein (.1) Lus10036974 [exp] 322 / 4e-102 AT3G01750 308 / 2e-97 Ankyrin repeat family protein (.1) Lus10041537 [exp] 78 / 5e-15 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10008329 [exp] 77 / 2e-14 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 74 / 8e-14 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10038609 [exp] 71 / 7e-13 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10005432 [exp] 71 / 2e-12 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 71 / 3e-12 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10020209 [exp] 70 / 3e-12 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335400 [exp] 842 / 0 AT3G01750 701 / 0.0 Ankyrin repeat family protein (.1) Potri.008G179100 [exp] 637 / 0 AT3G01750 579 / 0.0 Ankyrin repeat family protein (.1) Potri.010G055700 [exp] 603 / 0 AT3G01750 514 / 1e-175 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 91 / 1e-18 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.007G145200 [exp] 85 / 9e-17 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.006G223800 [exp] 80 / 1e-15 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 77 / 2e-14 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 77 / 2e-14 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 77 / 2e-14 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 75 / 6e-14 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10022330 pacid=23139502 polypeptide=Lus10022330 locus=Lus10022330.g ID=Lus10022330.BGIv1.0 annot-version=v1.0 ATGCCTCCTCCTACCTATTTGCCACTGAGATGGGAAAGCACAGGTGACCAATGGTGGTATGCTGCTCCCATTGACTGGGCAGCAGCCAATGGCCACTACG ACTTGGTTAGGGAGCTTCTTCGGATAGACAACAATCACCTCATCAACCTCACGTCCCTCAGGCGGATTCGTCGACTTGAGTCAGTGTGGGACGATGAGGA ACAGTTCATTGATGTTGCCAAGTGCAGGTCCCGTGTGGCGAGGAAGCTTTTCCTTGAATGTGAGTCCAAGAAGGGGAAGAACAATTCCAATTCACTTGTT CAGTCTGGCTATGGTGGATGGCTCATGTACACTGCTGCATCTGCTGGGGATTTGAGCTTTGTACAAGAGCTCCTCCAGAGGAACCCTCTGCTTGTGTTTG GTGAAGGAGAATATGGGGTTACTGATGTTCTCTATGCTGCTTCCAGGAGCAAAAACACACATGTTTTTAGGCTGGTTTATGACTTTGTTGTGTCTCCAAG GTTCTTGAAAGGTGGGGAGCTAGAGGAACGTTTAGGGGGAGAAATTCCTTCTCTTTATAAGTGGGAAATGTTGAATAGAGCCATTCATGCTGCTGCCAGA GGAGGAAATGTAACCATTTTGAAGGATCTGCTTGGCAATTGCAGCAGTGATATCTTGAGTTATAGAGATAAACAAGGCTCTACTATCTTACATGCTGCAG CTGCCAAAGGTCAAGTTGAGGTAGTAAAGTATCTTGCAGCATCCTTTGATAATGTGATAAGTTCAACTGACAATCTAGGCAACACGGCGTTGCACACTGC TGCTTATCGAGGACAGCTGCATGTAGTTGAAGCTCTGATTGAAGCACACCCTTATATGGTTTCCTCAACAAACAACGCTGGGGAAACTTTTCTCCACATT ACAGTTTCCGGCTTCCAGAACCCGGCTTTCAGAAGGCTGGACAGGCAGGTTGAGCTGATGAAGCAGTTAATAAGTGGTCGCAAAGGGTTCCATATTGAAC AAGTTATCAATGCCAAGAACAATGATGGAAGAACTGCACTCCACACTGCCATCCTTGCCAATGTTCACTCTGATCTGGTCCAGCTATTAATGGGGGTGAA ATCGATACACGTGAATGCTCGAGATGCAGATGGGATGACCCCTCTCGATCTCCTGAAGCAACGACCTCGGTCTGCTTCGTCTGATTACCTCATCAGGCAG CTGATTTCAGCAGGTGGGATGTTTGGTGGCTGCACTGCAAGAAGAGAAATAGCTTCGAGGCTGAAGATGCAAGGCGGGTTAGGAAGTCCCGGGACGTCGT TCAAGCTGTCTGATGCAGAAGTTTTCCTCTACACCGGAATCGAAGTTGCATCATCAGATGGAAATGGTGTTGGTGGACAAGTCAGTACTGGATTGAGTTC ATTGTCTTCGATCGACCTGCATCAACCAAATGCAGCAAGTTGCACAAAAGAAGAGCCACAAAGCCATGCAGCTAAGAGGATAAAAAGGGTGCTTCAATGG ACTAGAAGGAAACACAGGAAGCCTGCCAGTGGAAGTCACAGCAACTACAACAGTGATATGATGAAATCTGCTGCAATGGAGCAAGACGAAATGAGACAAG CGCCTCTTCGCCAGCGATTCACCAAGCCATCATCAGCATATTCATCATCATCACCTCCTCAAAGCAACAAGAGAACACTGGCAGTGAGGAGCAACCAATC AAGTCCAACCTCAAAGAAGAAGATTGCTTCAGGGCTAGTCCATGGAGTTCTCCTGCAGGCACTTCCACAAATAACAACAGCTCCTGGAGGGAAATCACAC TCAAGTTCTTTCTCGAAATCGCCATTTCCATCTCCAAGATCCATGGACAAGGCAAAGGGTATTATTGTGTTCAGTGAAGCTGAGGCATCCTGCTCCAACA CTCAGAATGGATTGGTTGTTGATGATGATGGTGTAACACCAAGAAGAAGAAGTATGGGGAAGAAAGAAGTTTCACCAAGAAGCCCGAATCGTCACAGGAG GTCAAGAAGCCAGTACTTTTGTTTTGGAGGAGCTGGTCTATCTATGAAATCGCCAGTTGGTAGGCACAGGAGGCAGCAGAGTGCTACTACTGCCCCATCA GTTGTGTCAGTTGCTTAG
AA sequence Show only first row Show all	>Lus10022330 pacid=23139502 polypeptide=Lus10022330 locus=Lus10022330.g ID=Lus10022330.BGIv1.0 annot-version=v1.0 MPPPTYLPLRWESTGDQWWYAAPIDWAAANGHYDLVRELLRIDNNHLINLTSLRRIRRLESVWDDEEQFIDVAKCRSRVARKLFLECESKKGKNNSNSLV QSGYGGWLMYTAASAGDLSFVQELLQRNPLLVFGEGEYGVTDVLYAASRSKNTHVFRLVYDFVVSPRFLKGGELEERLGGEIPSLYKWEMLNRAIHAAAR GGNVTILKDLLGNCSSDILSYRDKQGSTILHAAAAKGQVEVVKYLAASFDNVISSTDNLGNTALHTAAYRGQLHVVEALIEAHPYMVSSTNNAGETFLHI TVSGFQNPAFRRLDRQVELMKQLISGRKGFHIEQVINAKNNDGRTALHTAILANVHSDLVQLLMGVKSIHVNARDADGMTPLDLLKQRPRSASSDYLIRQ LISAGGMFGGCTARREIASRLKMQGGLGSPGTSFKLSDAEVFLYTGIEVASSDGNGVGGQVSTGLSSLSSIDLHQPNAASCTKEEPQSHAAKRIKRVLQW TRRKHRKPASGSHSNYNSDMMKSAAMEQDEMRQAPLRQRFTKPSSAYSSSSPPQSNKRTLAVRSNQSSPTSKKKIASGLVHGVLLQALPQITTAPGGKSH SSSFSKSPFPSPRSMDKAKGIIVFSEAEASCSNTQNGLVVDDDGVTPRRRSMGKKEVSPRSPNRHRRSRSQYFCFGGAGLSMKSPVGRHRRQQSATTAPS VVSVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10041571 [exp]	1.4	0.8636
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10002265 [exp]	2.2	0.8694
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10013781 [exp]	6.5	0.7996
AT2G40820			unknown protein		Lus10027293 [exp]	6.9	0.8383
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10027927 [exp]	7.3	0.7935
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	8.2	0.8193
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	8.7	0.8114
AT2G17550			unknown protein		Lus10016693 [exp]	9.4	0.7939
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10000919 [exp]	12.8	0.7783
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10005133 [exp]	13.4	0.7405

Compare expression of checked genes

Lus10022330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.