Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13440 598 / 0 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) AT3G04120 594 / 0 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G79530 485 / 2e-172 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT1G16300 482 / 3e-171 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT1G42970 275 / 1e-89 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 244 / 9e-79 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 242 / 3e-77 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014603 [exp] 637 / 0 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10032071 [exp] 637 / 0 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10006435 [exp] 568 / 0 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10011375 [exp] 568 / 0 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10015826 [exp] 565 / 0 AT3G04120 606 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10036976 [exp] 547 / 0 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10009602 [exp] 486 / 2e-172 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10000872 [exp] 484 / 6e-172 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10016033 [exp] 258 / 7e-83 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335800 [exp] 596 / 0 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.012G094100 [exp] 591 / 0 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.015G091400 [exp] 587 / 0 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.010G055400 [exp] 579 / 0 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.008G179300 [exp] 563 / 0 AT3G04120 573 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.008G083900 [exp] 481 / 1e-170 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.010G172400 [exp] 479 / 4e-170 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.005G254100 [exp] 261 / 8e-84 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G007100 [exp] 259 / 8e-84 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G220566 [exp] 240 / 2e-76 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00044 [flax] [poplar] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02800 [flax] [poplar] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022332 pacid=23139426 polypeptide=Lus10022332 locus=Lus10022332.g ID=Lus10022332.BGIv1.0 annot-version=v1.0 ATGGCCAAGATCAAGATCGGAATCAACGGTTTCGGAAGGATTGGGCGTCTGGTTGCCAGAGTAGCGTTGCAGAGAGACGATGTGGAGCTCGTAGCCGTTA ACGATCCTTTCATCACCACTGATTACATGACCTATATGTTCAAGTATGATAGTGTTCATGGGCAATGGAAGCACCATGAGGTCACCGTCAAGGACACCAA AACCCTTCTCTTTGGCGACAAGCCTGTCACTGTTTTCGGCTGCAGGAATCCAGAGGAAATCCCATGGGGTGAAACGGGAGCAGACTACGTTGTTGAGTCC ACTGGGGTGTTCACTGACAAGGATAAAGCTGCTGCTCATTTGAAGGGTGGTGCTAAAAAGGTAGTGATATCAGCACCAAGCAAAGATGCTCCAATGTTTG TTGTTGGGGTGAATGAGAAGGAATACAAGCCTGATCTTGATGTTGTCTCTAACGCTAGCTGCACTACCAACTGCCTTGCTCCATTGGCTAAGGTAATCAA TGACAAGTTTGGTATTGTTGAGGGACTTATGACCACAGTCCACTCCATTACAGCTACACAGAAGACTGTGGATGGTCCATCAATGAAGGACTGGAGAGGT GGAAGAGCTGCCTCCTTCAACATCATTCCAAGCAGCACTGGAGCTGCTAAGGCTGTTGGGAAAGTGTTGCCTGCACTAAATGGAAAGTTGACTGGTATGG CCTTCCGTGTTCCCACCGTTGATGTCTCAGTGGTCGATCTCACCGTCAGACTCGAGAAAAGCGCCACTTATGATGATATCAAGAAGGCCATGAAGGAAGC ATCTGAGGGTAGCATGAAGGGAATCCTTGGTTACACGGAAGATGATGTTGTCTCCACCGACTTTGTGGGATGCAACAGGTCTAGCATCTTCGATGCCAAG GCCGGAATCGCTCTGAACGACAACTTTGTGAAGCTCGTGTCTTGGTATGATAACGAGTGGGGTTACAGCTCGAGGGTTGTGGACTTGATCTGCCACATGG CATCATGCAACTAA
AA sequence Show only first row Show all	>Lus10022332 pacid=23139426 polypeptide=Lus10022332 locus=Lus10022332.g ID=Lus10022332.BGIv1.0 annot-version=v1.0 MAKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEVTVKDTKTLLFGDKPVTVFGCRNPEEIPWGETGADYVVES TGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPDLDVVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRG GRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKSATYDDIKKAMKEASEGSMKGILGYTEDDVVSTDFVGCNRSSIFDAK AGIALNDNFVKLVSWYDNEWGYSSRVVDLICHMASCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	0	1
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029004 [exp]	1.4	0.9234
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	3.0	0.9076
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	4.7	0.9182
					Lus10018313 [exp]	4.9	0.9065
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	6.5	0.8928
AT3G07750			3'-5'-exoribonuclease family p...		Lus10006382 [exp]	8.9	0.8381
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	12.4	0.8702
AT5G07950			unknown protein		Lus10034694 [exp]	13.9	0.8768
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	14.8	0.8862
AT2G47010			unknown protein		Lus10000888 [exp]	16.5	0.8766

Compare expression of checked genes

Lus10022332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.