Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14260 753 / 0 Rubisco methyltransferase family protein (.1.2.3) AT3G07670 120 / 1e-28 Rubisco methyltransferase family protein (.1) AT3G55080 81 / 6e-16 SET domain-containing protein (.1.2) AT1G14030 66 / 5e-11 Rubisco methyltransferase family protein (.1) AT5G17240 62 / 5e-10 SDG40 SET domain group 40 (.1) AT2G18850 52 / 9e-07 SET domain-containing protein (.1.2) AT1G24610 45 / 0.0002 Rubisco methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041585 [exp] 1009 / 0 AT5G14260 765 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10012309 [exp] 104 / 3e-23 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 84 / 8e-17 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10025268 [exp] 68 / 2e-13 ND / Lus10036780 [exp] 70 / 3e-12 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10040345 [exp] 69 / 7e-12 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10021783 [exp] 59 / 1e-08 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10015596 [exp] 51 / 5e-07 ND 41 / 2e-04 Lus10033031 [exp] 49 / 2e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066500 [exp] 766 / 0 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Potri.014G169300 [exp] 112 / 4e-26 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 69 / 3e-12 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.004G081400 [exp] 59 / 8e-09 AT5G17240 543 / 0.0 SET domain group 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09273 [flax] [poplar] Rubis-subs-bind Rubisco LSMT substrate-binding
Representative CDS sequence Show only first row Show all	>Lus10022333 pacid=23139388 polypeptide=Lus10022333 locus=Lus10022333.g ID=Lus10022333.BGIv1.0 annot-version=v1.0 ATGGAAGTCGTCCCCACTGCTTCACTGAACAACTCCTACTCCATCCCTCCTCTCCCCTTCCTCTCTAGGGTTTCCATTTCCCTCTTCCACACCACCCGCC GTCAGCATCGACAACAGCAACAGCAACAGCTACGCCGCCGCCGCTCCCTGTCTATCCATCGGAACCGCGGCTGCTGCTTTGCCTCTACCCCAGAGGCCGT GGTTGCTTGCAATTCGAGGAAAGAAGACGGCAAGCGTGGAGTTTCGAGCAAGAGAGAAGGGCACGAGGGCGTGGAGGATGAGCAGCTTGGGGATTTGAAG TCTTGGATGCATCAGAACGGCCTTCCTCCTTGCAAAGTTGTTCTTAAAGATAGGCCTTCTCTCGATGAGAACCACTGCTCCATTCATTACGTTGCCGCCA GTGAGGATCTTGAGGCTGGGGATGTGGCGTTCTCGGTCCCGAATTCCCTTGTTGTGACTCTTGACAGGGTATTAGGAAACGAGACAGTAGCGGAATTGTT AACAACAAATAAACTGTCGGAGTTGGCGTGCTTGGCATTGTATTTGATGTACGAGAAGAAGCAGGGAAAGAAGTCATTCTGGTATCCATACATACGAGAA CTTGATCGTCAGCGAGGTCGAGGTCAGCTTGCTGTGGAATCTCCACTGCTGTGGTCAGAGGCTGAATTGGCTTACCTGACAGGTAGCCCAACTCAGGCTG AAATTGTGGAAAGAGCAGATGGCATCAAGAGAGAATACGATGAACTTGACACTGTGTGGTTCATGGCTGGTTCCTTGTTTCAGCAATATCCTTTTGATAT ACCTACAGAAGCGTTTTCATTTGAGATCTTCAAACAAGCTTTCGTTGCTGTTCAGTCTTGTGTGGTGCATTTGCAGAAAGTCAGTTTGGCTCGTAGGTTT GCTTTGGTCCCTCTTGGCCCCCCGCTGCTATCCTACGGAAGCAACTGTAAGGCGATGTTAAGTGCTGTTGAAGGTGCTGTTGAACTAGTAGTTGATCGCC CATACAAGGCTGGTGAACCAATCACTGTCTGGTGTGGACCACAACCCAATTCAAGATTGCTTATAAACTATGGTTTTGTTGATGAGGGCAATGCTTATGA TCGGCTAGTGATGAAGGCAGCACTAAACACTGAGGATCCTCAATATCAGGACAAGAGATTAGTTGCTCAAAGAAATGGCAAGCTATCTATGCAAGACTTT GTTGTTCAAGTGGGAAAGGAAAAGGAAGCTGTGGCTGAAATGCTTCCTTATTTGCGATTAGGCTATGTATCAGATCCTTCTGAGATGGAATCTGTTATAT CTTCTCAAGGACCTGTTTGTCCAGTTAGCCCTTGCATGGAGCGAGCAGTTTTGGATCAGCTTGTTGAGTATTTTAATAGGCGTCTTTCTTTATATCCAAC TAGCTTGAGCGAAGATGATTCTATGTTGGCAGAAGAGAAGTTGAACCCAAAGAAGAGAGTTGCTACGCAGCTAGTGAGGTTGGAAAAGAAAATACTTCAT GCTTGTCTGCAGGCAACGTGCAATTTGATGGACCAGCTACCTGATGACATGATCTCTCCATGTCCAGCTCCTTTCAGTAAAAGATGGATGATATTCTTTT CGAGTGAAGAAATGCGAATCAATCCATCATCGGCTGTGGAAGAGATTCTGGGTACATTCACCACCGACCAGTTGTTGAAGCAAGAGCTTTACTCGAGGCT ACGAATGCCGCTATCAAGTCCGGAACCAACCTCCATCTTCTCAGATAACATTACCCTGATTGACATCATCAACCACTCGCTACCTTGGCCGTGGGACTGT TATGCAATCATTGGGTTGATCATTCATCTCGATGCAGATGAGCCGAGAATTAAGTTTCACTTTGTCCCCAGGAAACGCTACAAAATTGCAGATTGGGTGG CAACCTCCTCAAGGGCTCATTCGCTGCATCGGGACTGGGTTCCTCGGCTTAATTCCAATCTCATGTAA
AA sequence Show only first row Show all	>Lus10022333 pacid=23139388 polypeptide=Lus10022333 locus=Lus10022333.g ID=Lus10022333.BGIv1.0 annot-version=v1.0 MEVVPTASLNNSYSIPPLPFLSRVSISLFHTTRRQHRQQQQQQLRRRRSLSIHRNRGCCFASTPEAVVACNSRKEDGKRGVSSKREGHEGVEDEQLGDLK SWMHQNGLPPCKVVLKDRPSLDENHCSIHYVAASEDLEAGDVAFSVPNSLVVTLDRVLGNETVAELLTTNKLSELACLALYLMYEKKQGKKSFWYPYIRE LDRQRGRGQLAVESPLLWSEAELAYLTGSPTQAEIVERADGIKREYDELDTVWFMAGSLFQQYPFDIPTEAFSFEIFKQAFVAVQSCVVHLQKVSLARRF ALVPLGPPLLSYGSNCKAMLSAVEGAVELVVDRPYKAGEPITVWCGPQPNSRLLINYGFVDEGNAYDRLVMKAALNTEDPQYQDKRLVAQRNGKLSMQDF VVQVGKEKEAVAEMLPYLRLGYVSDPSEMESVISSQGPVCPVSPCMERAVLDQLVEYFNRRLSLYPTSLSEDDSMLAEEKLNPKKRVATQLVRLEKKILH ACLQATCNLMDQLPDDMISPCPAPFSKRWMIFFSSEEMRINPSSAVEEILGTFTTDQLLKQELYSRLRMPLSSPEPTSIFSDNITLIDIINHSLPWPWDC YAIIGLIIHLDADEPRIKFHFVPRKRYKIADWVATSSRAHSLHRDWVPRLNSNLM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	0	1
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	1.4	0.9320
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10017039 [exp]	3.5	0.9241
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	5.7	0.9211
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	7.1	0.9291
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10005156 [exp]	8.1	0.9184
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10041325 [exp]	9.9	0.9013
AT3G28460			methyltransferases (.1)		Lus10005835 [exp]	10.7	0.8818
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	11.2	0.8973
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10038031 [exp]	11.5	0.9035
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	11.7	0.8768

Compare expression of checked genes

Lus10022333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.