Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63380 227 / 2e-70 AMP-dependent synthetase and ligase family protein (.1) AT1G20490 143 / 1e-39 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 142 / 2e-38 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 142 / 2e-38 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 139 / 3e-37 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 133 / 1e-35 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 130 / 3e-34 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 120 / 2e-30 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 108 / 2e-26 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G62940 103 / 7e-25 ACOS5 acyl-CoA synthetase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002791 [exp] 227 / 3e-70 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 218 / 8e-67 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10012280 [exp] 143 / 4e-38 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 138 / 7e-37 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 135 / 5e-36 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 134 / 1e-35 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10013831 [exp] 133 / 4e-35 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 130 / 3e-34 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10026544 [exp] 127 / 5e-33 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G033600 [exp] 310 / 2e-102 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 231 / 8e-72 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 229 / 3e-71 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G057000 [exp] 226 / 5e-70 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 217 / 2e-66 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 215 / 7e-66 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.008G031500 [exp] 146 / 8e-40 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 135 / 6e-36 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 122 / 2e-31 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 121 / 8e-31 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10022335 pacid=23139355 polypeptide=Lus10022335 locus=Lus10022335.g ID=Lus10022335.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCCACAAAAAACCTCGAAAACGGTTTCGATTCCGCCACCAAGACATTCCACAGCTTGAGACCACCGATCCACCTCCCGCCGCCAGAAGCTC CCATTTCTGTCGTCGATTATGTCCTCTCGCTCCAATCCAGCTCACCCTGGCCAGCCTCCACCGCTGCCTTAATCGATTCCGCCACCGGTCGACGAATCCC TTACTCCGACCTCCTCAAACGGCACAGGTCCTTGTCGTATTACCTCCGCAACGTTCTCAAGCTATCCCCGAACGACGCCGCTTTGGTGATCTGCCCCAAC TGCGTTCAAGTCCCGATCCTCTACCTGACCCTTCTCTCCATCGGCGTCGTCGTCTCCCCTGGAAATCCGGTCAGCACCGGGTCGGAAATCGCAAGGCTTG TCGAGCTAGCTGACCCGGTAATCTTGTTCGCCACGACATCGACGGCTCGCAAGCTCCCAAAGCTGAGGCTCGGTACGATCCTAGTCGACTCGCCCGAGTT TGAGTCGATGATGAGGGATTACGATTTCTTAGCCGGCGGACAAGTCAAGGTGAGTCAATCGGACGTGGCGGCGATCCTGTACTCGTCCGGAACGACTGGG AGAACTAAGGGAGTGATGCTGACTCACAGGAATCTTATCGGTTCCGTCGCTGCGGCGGTTAAAAGGGACTCCCCGGCTGTTTTGCTGTATACGATGCCGT TCTTCCACATGTTCGGGTTCTCCTACTTTCTCAAATCGATCGCGTTGACGGAGACTGTCGTGGTAATGCCAAGGTTCGATTTGACCGCGATGTTGAAAGC GGTGGAAAAGTTCGGCGTCACCGACACGGCGCTAGCACCGCCGGTGGTGGGGGCGATGTTGGAAACAAGTTTGACGGGGGGCTAA
AA sequence Show only first row Show all	>Lus10022335 pacid=23139355 polypeptide=Lus10022335 locus=Lus10022335.g ID=Lus10022335.BGIv1.0 annot-version=v1.0 MAAATKNLENGFDSATKTFHSLRPPIHLPPPEAPISVVDYVLSLQSSSPWPASTAALIDSATGRRIPYSDLLKRHRSLSYYLRNVLKLSPNDAALVICPN CVQVPILYLTLLSIGVVVSPGNPVSTGSEIARLVELADPVILFATTSTARKLPKLRLGTILVDSPEFESMMRDYDFLAGGQVKVSQSDVAAILYSSGTTG RTKGVMLTHRNLIGSVAAAVKRDSPAVLLYTMPFFHMFGFSYFLKSIALTETVVVMPRFDLTAMLKAVEKFGVTDTALAPPVVGAMLETSLTGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63380			AMP-dependent synthetase and l...		Lus10022335 [exp]	0	1
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10035627 [exp]	1.7	0.8228
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10033061 [exp]	6.5	0.8176
					Lus10016767 [exp]	9.7	0.8049
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	11.2	0.7709
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	12.0	0.7922
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	13.5	0.7645
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	17.9	0.7776
AT5G58750			NAD(P)-binding Rossmann-fold s...		Lus10040675 [exp]	23.1	0.8187
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10033060 [exp]	24.3	0.7921
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10031929 [exp]	25.8	0.7178

Compare expression of checked genes

Lus10022335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.