Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14250 551 / 0 CSN3, FUS11, COP13 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) AT1G75990 68 / 3e-12 PAM domain (PCI/PINT associated module) protein (.1) AT1G20200 62 / 3e-10 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041586 [exp] 685 / 0 AT5G14250 450 / 2e-154 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10032065 [exp] 680 / 0 AT5G14250 503 / 7e-177 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10014595 [exp] 603 / 0 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10005061 [exp] 69 / 2e-12 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10027832 [exp] 68 / 5e-12 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10034469 [exp] 63 / 2e-10 AT1G20200 798 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10025072 [exp] 44 / 0.0003 AT1G75990 338 / 3e-112 PAM domain (PCI/PINT associated module) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334200 [exp] 683 / 0 AT5G14250 507 / 1e-179 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.017G066300 [exp] 669 / 0 AT5G14250 522 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.009G136900 [exp] 59 / 2e-09 AT1G20200 676 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10022337 pacid=23139496 polypeptide=Lus10022337 locus=Lus10022337.g ID=Lus10022337.BGIv1.0 annot-version=v1.0 ATGAACGCAGTGGAAGCGCTTTTGACCCAAATCCAGGGGTTGTCGACCAGTACGAGTGACCTGGCGGTGCTTCACACGCATTTGAAACAAGCAGACGATG CACTTCGTGGCGAGTCGGCCAGGCTGCTGCCTTTCCTCGACCAGCTTGACCCTGCAATCCATTCTCTTGGTTACCTCTATCTTCTAGATGCTTGCACTTC TGGGCCAGTATCCAAAGAACAGGCAGCGAGTCTGGTTCTAATTTCTGCAAGGTTCATCACTTCCTGCAGTGCTGAGCAAATTCGTTTGGCACCCGATAAG TTCATAGCCATTTGCAAGAGATTCAAGGATCATGTTATGTTAATCGAAGCACCTCTTCGTGGGATAGCTCCACTGCTGACTGCTGTACGGAAGCTTCAAT CTTCCCCTGAACATTTGACTAATCTGCATCCAGATTTTCTTCAACTTTGTTTGCTAACAAAGTGCTATAGGACTGGGCTTTCACTTCTCGATGACGATAT TTTTGAGGTTGATCAGCCAAGAGATATATTCCTTTATTGTTACTACGGGGGTATGATCTGCATTGGACAAAAGCATTTTCAGAAAGCCTTGGAGCTTTTG CATAATGTTGTTACTGCACCAATGACTTCGATAAATGCTATAGCTGTTGAAGCTTACAAGAAATATGCATTAGTTTCACTCATTCACCATGGACAATTCT CATCTAATCTTCCCAAGTATACTTCATCAGCTGCACAGAGGAATCTGAAGAACTTCTGTCACCCCTATATTGAGTTGGCCAATACTTACAGCACTGGAAA GATTGAAGAATTAGCCGCATATGTTCAAAAGCACCGAGAAAAGTTCGAAAGCGACAATAATCTCGGACTGGTGAAACAAGTTGTATCGTCTATGTATAAG AGAAACATCCAGAGGTTGACACAGACGTATTTAACCCTTTCCCTGCAAGACATAGCTAATACTGTTCATCTCAATAGTGCTAAGGATGCAGAGATGCGAG TCCTTCAAATGATTCAAGACGGTGAAATATATGCTTCAATCAACCAGAAAGATGGCATGGTGAGGTTTTTGGAGGATCCAGAACAATACAAGACGAGTGG AATGATCGAGCGTATTGACTCTTCAATTCAAAGGTTAATGACAGTATCAAAGAAGTTGACGATGATGGATGAACAGATGTCTTGCGATCCTTTATACCTA ACAAAGGCTGGAAGGGAGCGTCAGAGATTCGATTTCGATGATTTCGACCCTGTTCCTCAGAAATTCAACATGTGA
AA sequence Show only first row Show all	>Lus10022337 pacid=23139496 polypeptide=Lus10022337 locus=Lus10022337.g ID=Lus10022337.BGIv1.0 annot-version=v1.0 MNAVEALLTQIQGLSTSTSDLAVLHTHLKQADDALRGESARLLPFLDQLDPAIHSLGYLYLLDACTSGPVSKEQAASLVLISARFITSCSAEQIRLAPDK FIAICKRFKDHVMLIEAPLRGIAPLLTAVRKLQSSPEHLTNLHPDFLQLCLLTKCYRTGLSLLDDDIFEVDQPRDIFLYCYYGGMICIGQKHFQKALELL HNVVTAPMTSINAIAVEAYKKYALVSLIHHGQFSSNLPKYTSSAAQRNLKNFCHPYIELANTYSTGKIEELAAYVQKHREKFESDNNLGLVKQVVSSMYK RNIQRLTQTYLTLSLQDIANTVHLNSAKDAEMRVLQMIQDGEIYASINQKDGMVRFLEDPEQYKTSGMIERIDSSIQRLMTVSKKLTMMDEQMSCDPLYL TKAGRERQRFDFDDFDPVPQKFNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10022337 [exp]	0	1
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	1.0	0.9442
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10008977 [exp]	2.4	0.9131
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10018090 [exp]	4.5	0.9147
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	7.4	0.9032
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	9.4	0.9111
AT1G12390			Cornichon family protein (.1)		Lus10000384 [exp]	11.9	0.8501
AT5G14290			Mitochondrial ribosomal protei...		Lus10041583 [exp]	13.0	0.8913
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	13.7	0.8939
AT4G31460			Ribosomal L28 family (.1)		Lus10013249 [exp]	15.9	0.8854
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	17.0	0.8888

Compare expression of checked genes

Lus10022337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.