Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40840 179 / 1e-46 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) AT5G16270 118 / 7e-27 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) AT3G59550 98 / 7e-21 ATSYN3, SYN3, ATRAD21.2 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) AT5G05490 68 / 2e-11 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041587 [exp] 1608 / 0 AT5G40840 181 / 2e-47 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10026862 [exp] 116 / 3e-26 AT5G16270 382 / 3e-114 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10023028 [exp] 105 / 4e-23 AT5G16270 327 / 2e-101 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10037478 [exp] 101 / 1e-21 AT3G59550 315 / 4e-97 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Lus10020235 [exp] 99 / 1e-20 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020233 [exp] 68 / 3e-11 AT5G16270 308 / 7e-91 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067400 [exp] 281 / 9e-82 AT5G40840 218 / 6e-60 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Potri.010G178600 [exp] 120 / 2e-27 AT5G16270 417 / 2e-127 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.008G078500 [exp] 118 / 7e-27 AT5G16270 407 / 2e-123 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.001G225600 [exp] 112 / 4e-25 AT3G59550 402 / 5e-130 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04825 [flax] [poplar] Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein CL0157 [flax] [poplar] Kleisin PF04824 [flax] [poplar] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Lus10022338 pacid=23139402 polypeptide=Lus10022338 locus=Lus10022338.g ID=Lus10022338.BGIv1.0 annot-version=v1.0 ATGTTTCACTCGCAATGCTTCCTTTCCCGTAAAGGCCCACTGCGCTCAGTTTGGGTGGCTGCTTACTGCTTCAACAAGCTCAAGAAATCCCAAGTCACTG ACACTGACATCTCCTCCTCCGTTGACAAAGTCTTGAAAGATGAGTTTGATGCCGTTGCGTATAGAGTGTTGGCCTACTTTCTCCTTGGGATTGTCAGGAT ATACTCCAAGAAGGTTGAGTACCTGTTCAGTGACTGCAACAAGGTGCTTGTTGAAGTCAAGGATTTTGCTGTCGGTACTACTACTGCCGACACCTTGATT GTTCCATTTACTGCTCCACGTTTCACCATTACTCTTCCTAAAAGCTTCCAACTTGACGCTTTTGACTTGGGGATACTGGAAGATGCTTGTGGGTGTAATG TGCTGCCTCTAGAAGATATCACACTTAGAGGTATATCCCTTTCTTGCCGTTTTGTTTTATGGTTCCAGCAGCTTAGCGTTTTAAGTCCTTTTGGAACAGA TATTACGAGGAGGCATGGAGGATCTGAGCGCCTCGTTCTTGACAAGTTTCATAGCCAGGATAGAGGTCCTTCAGGAAACTATCTGAATGACATGTTGGCA ATTGAGTATCGACCAGGTACATCAAGTATCAAAGAGAATTTGGAAGCATCTGTAGAAACTAATGATAACTATTACCAAGATTCTGTTGAGCGTGAAAGGG TATTATGGGTTCACGAAGAGCCTCCAGAGATTGGAACGTCATATTCACGAGTATGTCAACCAGAAGATAGTGCAGACTCCAACGAATTGTGTATGCAGAA GGTATGGGATGATGGCTACTGTGAAGCATTATCCCTGAATGTTGACATGTTTTTTGGAATTGAGACAAAGCATCTGAACATTGTTGAGCCTCCTGAGGCA CAAACCAATACGCATGATGGTGATCGGAGTGAAATAGAATTAATTACAGAGGAATTTCAAGATACTGCATGCTTGCAGGACCAACCTATGGATTATGAAA TGTGTCCTAGTGTTGAGAAGCCCCTCGAACATTTTGCTACAGAGCATAAGGATGATGCAGAACCGGTAGACTTGTTGCATGCAACATCAGCAAGCTGTAT GAAGCGGAAGTTTGGACTAGTATATCAGAGGAGAGCAAAGAAAGCAATTGTTTTTGATGCAGCAGGGCCGATAGAGACTACTATTCAGATCTATCAGCCA ACTGAGGGTGACTGCGATTCAGGCCATGTAGAAGCTAGCACAGAGAAACTGCTGGACTCTAGATTGTATAAGGAAAAAATTATGCAGCTGGAAACGTTGA GCCCAGTTGGTGGACGCCCTGAATGTGCTACCTCATATGAGAATCATAGAGAAGCTGAACCCATTAAGCCGGTAGACTCAACTCCATCCGGAAATGCTAA GTACCGATTGTCCAGAGATGATTGTGCTCTGTCAGTTACGGTTGAAAGTACTCCTGAATCCAAGTTTCCGAATACTTCAGGAATTAATACAACACCGGAG TTCTTTGTTCTTCCTACTCCAGCTGCTAAGGATACTGTTCCGACTCATAGGAGAAGAAAATGCATCTTCGATAATATTATTGTGCTTCCTAATGATTTAG CTTTGAAGCATCAAAGGAGGGAAGAAAACTTGCAAACTGGTGCTGTTAGGATAATAACTCTCTCACGTTCCCGTTGCAGCTTAATTAAGCGAAACGTAGA GGATCCCAGTGAGTTGGTTACTAAAAGAAGAAAGGTCCCTCGAACTGCTCTTGATTCCTGGAGGGCTTATCGACTTTCCGATCTCCATCAGTGTCTTGTG GAACCTTTGATTCCTTGTTTGGCATTGGGGACCGCATGCCTCCCCTCTAAACGGAGATCGAAGATTTCAGAAACTAAAAAAACTGGGGAGACTCCTGAAA AGAATGTATCAAGATACTCGATTGGCCAGTCTGCTACTGAAATTGTGGAACCTACAGAAAAGTCAGAGATGTTAGATTCTCAGCATGTTGTTAGATCAGT TCAAACACCTGTTGAAGGTGTTGAATCTGTGGATAACTTGGGTGATTTTATTCATCCAGTTGTCGATGAAACAGCCGAAATAGAACCACAAGCAGGGTCA GATGGTCGTGAACCTGAAAATGCTAGCAAAACTTCTGAGCAGTCAGTGATTGCTCCTGGAACACCAGTTCGTCTATCGATTCAAACGATGAACCCTCCAA CAAAACTGAATACACCAGAGGTGGGATATGTCTCAGAACATACTACAATGGCTCCTGAAACGCCGATGCAGTACACAGGAATAATGAGATCTTATGGGAG CCCCGAGAGACCTGACAGTGGCAACTCGGATTTGGTTGGTCCAGGATTTGGCCGAAAGAAGGGTCAAGAAATTGATTTCAATTCCATGGATGAAGATATG AGGGCTGAAGACGAAGTCCAGAACATGTATGGATGGTCAGAGAGAACCAGGATGGTAGCAAGGTTCTTGCAGAAGAGTTTCCAAGAGAAGCTCCAAAACG GAGAGGATGAAGCTGTAAACTTGCTGCAACTTCTGGAAGGAAGGACCAAGAAAGAGAGCGCAAGGGTTTTCTATGAGATATTGGTGATGAAAAGTAAAGG GCATGTGGATGTGAAGCAGGAAAGTGGATACGGAGAAGTTCTTGTGCAGAAGGCCTCTCAATGGAGTTGTGATGAGTGA
AA sequence Show only first row Show all	>Lus10022338 pacid=23139402 polypeptide=Lus10022338 locus=Lus10022338.g ID=Lus10022338.BGIv1.0 annot-version=v1.0 MFHSQCFLSRKGPLRSVWVAAYCFNKLKKSQVTDTDISSSVDKVLKDEFDAVAYRVLAYFLLGIVRIYSKKVEYLFSDCNKVLVEVKDFAVGTTTADTLI VPFTAPRFTITLPKSFQLDAFDLGILEDACGCNVLPLEDITLRGISLSCRFVLWFQQLSVLSPFGTDITRRHGGSERLVLDKFHSQDRGPSGNYLNDMLA IEYRPGTSSIKENLEASVETNDNYYQDSVERERVLWVHEEPPEIGTSYSRVCQPEDSADSNELCMQKVWDDGYCEALSLNVDMFFGIETKHLNIVEPPEA QTNTHDGDRSEIELITEEFQDTACLQDQPMDYEMCPSVEKPLEHFATEHKDDAEPVDLLHATSASCMKRKFGLVYQRRAKKAIVFDAAGPIETTIQIYQP TEGDCDSGHVEASTEKLLDSRLYKEKIMQLETLSPVGGRPECATSYENHREAEPIKPVDSTPSGNAKYRLSRDDCALSVTVESTPESKFPNTSGINTTPE FFVLPTPAAKDTVPTHRRRKCIFDNIIVLPNDLALKHQRREENLQTGAVRIITLSRSRCSLIKRNVEDPSELVTKRRKVPRTALDSWRAYRLSDLHQCLV EPLIPCLALGTACLPSKRRSKISETKKTGETPEKNVSRYSIGQSATEIVEPTEKSEMLDSQHVVRSVQTPVEGVESVDNLGDFIHPVVDETAEIEPQAGS DGREPENASKTSEQSVIAPGTPVRLSIQTMNPPTKLNTPEVGYVSEHTTMAPETPMQYTGIMRSYGSPERPDSGNSDLVGPGFGRKKGQEIDFNSMDEDM RAEDEVQNMYGWSERTRMVARFLQKSFQEKLQNGEDEAVNLLQLLEGRTKKESARVFYEILVMKSKGHVDVKQESGYGEVLVQKASQWSCDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10022338 [exp]	0	1
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	3.7	0.9284
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	4.5	0.9177
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033459 [exp]	6.0	0.9027
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	6.6	0.9071
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	6.7	0.9044
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	10.6	0.8974
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031813 [exp]	14.9	0.8489
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	17.0	0.9087
AT3G02710			ARM repeat superfamily protein...		Lus10010958 [exp]	18.2	0.8721
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	19.0	0.8966

Compare expression of checked genes

Lus10022338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.