Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14230 915 / 0 unknown protein AT5G13530 61 / 3e-09 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT2G03430 59 / 3e-09 Ankyrin repeat family protein (.1) AT2G14255 56 / 8e-08 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G25600 54 / 3e-07 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT5G57740 52 / 1e-06 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G02620 51 / 3e-06 ATANK1, ANK1 ankyrin-like1 (.1) AT1G07710 50 / 4e-06 Ankyrin repeat family protein (.1) AT3G04710 50 / 5e-06 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G40160 49 / 5e-06 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041588 [exp] 1350 / 0 AT5G14230 962 / 0.0 unknown protein Lus10015811 [exp] 740 / 0 AT5G14230 727 / 0.0 unknown protein Lus10036990 [exp] 516 / 5e-176 AT5G14230 510 / 5e-174 unknown protein Lus10036989 [exp] 241 / 1e-74 AT5G14230 224 / 2e-68 unknown protein Lus10014522 [exp] 64 / 2e-10 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10032165 [exp] 62 / 6e-10 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10007432 [exp] 62 / 7e-10 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10020272 [exp] 61 / 3e-09 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 61 / 3e-09 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333600 [exp] 1043 / 0 AT5G14230 975 / 0.0 unknown protein Potri.010G057300 [exp] 886 / 0 AT5G14230 843 / 0.0 unknown protein Potri.011G151300 [exp] 572 / 0 AT5G14230 568 / 0.0 unknown protein Potri.013G062000 [exp] 81 / 9e-16 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 70 / 3e-12 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.001G029600 [exp] 62 / 1e-09 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.006G061800 [exp] 62 / 2e-09 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.018G121200 [exp] 60 / 6e-09 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.006G176600 [exp] 59 / 6e-09 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.007G099600 [exp] 57 / 3e-08 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10022339 pacid=23139448 polypeptide=Lus10022339 locus=Lus10022339.g ID=Lus10022339.BGIv1.0 annot-version=v1.0 ATGACGGTGTTCTCTGGCAAGCAAGTGGTCCCGGTGAACTACGAGGCCGAGGTGTCGCAGCAGCTATTGGAAGCTTGTCTCTCCAGCGATCTCAGATCCG CTCTTGACTGCATTTCCGATCCTTGTCTCGATGTCAACTTCGTCGGAGCTGTCTGCTTGAAGTCCAGGAGGAGCGAGGTCGTACTGCGCGACGAATCGGC CGGGGAAGTCCGGGTGGAGTACGAGGAGTTCAAGACCGACGTCACCGCTCTCTTTCTCGCCGTTCACTCCGGGAATGTGGATCTCGTCAGGAATTTGCTG AGCATTGGAGCTGATGTAAACCAGAAACTCTTCAGGGGTTTCGCGACAACAGCAGCAGTAAGAGAGGGCCACCTTGAGATTCTGGAGATCTTACTTAAAG CTGGCGCTTCTCAGCCGGCCTGCGAAGAGGCTTTATTGGAAGCAAGCTGTCATGGGCGGGCAAGGGGAACTGAAGTATTAATGGGGTCTGATCTCATTCG GCCCCATGTTGCTGTTCATGCTCTTGTCACCGCATCCTGCAGAGGATTCGCGGATGTAGTCGACACTCTAATGAAGTGTGGTGTTGACTTCAACGCCACC GACAGATTGCTACTGTTGTCGTCTAAACCTTCTCTCCACACTAATGTTGACTGCTCTGCACTTGTTGCTGCTGTTGTAACTAGACAGGTTGATGTCGTCC GTATGCTACTGAAGGCTGGTGCGAAGACCGACGTTAATGTAAGATTAGGAGCATGGTCATGGGACACAACTACTGGAGAGGAGTTCCGGGTTGGTGCAGG ATTAGCTGATCCTTATGGTATCACATGGTGCGCTGTGGAGTATTTCGAATCTACAGGCACTGTTTTGAGAATGCTCCTCCAACATTATAACTTCTCTCCC AATAATACTCACCACGGAAGAACATTGCTGCACTATGCTATTCTCTGCGGGAACGAAGGTGCTGTCAGAGTACTTTTAGGCTGCGGTGCTGATGTAGAGG CCCAAGTCAAAACAGTGAAGACCGTGTTCAGACCAATTCACATGGCTGCTCGTTTGGCATTACCGGCAGTGCTTAAACTCCTTATCCAATCAAGCTGTGA TCTGAACTCCAGGACAGATTCTGGGGACACAGCTTTAATGATCTGTGCAAAGTACAGGCATGAGGAGTGTCTCAAGGTATTAGCCATGGCTGGTGCTGAT TTCGGCCTGGTAAACAATGCCGGCCAATCTGCACTTTCGATTGCTGCTACAAACCGATGGTTCCTCGGGTTTCAGCAAGCTGTACTTGAAGCAATCAAGT CCGGAAATGTTCCTGTTTCTAGCAATGTTTCCGTATTCTGTCCTCTCTTCTTTGTATCCCAAGCTGGCGACGCAGAGGCCCTGCAAGTGCTGATCAAGTC AACCTGCATGAAAGAAGTAGTTGACCTCGATTACCAAGATGAAAATGGATATTCGGCAGTCATGTTCGCAGCATTACACGGTCGTGTCGAAGCATTCAGG TTGCTAGTCCAGGCAGGAGCCGACGTAAAGCTGCAGAACAAATCCGGCGAAACTGCAATATCCTTATCCGAACTGAACCAGAACCGTGACCTTTTTGAGA AGGTAATGCTGGACCACGCTTTGGAAAAGGGGAACCGGTCAGCCGGAGGTTTCCACGCTTTGCACTGCGCAGCACGCCACGGAGACATAGTTGCAGCCAA GTTGCTTATAACCAGTAGAGGCTACGACGTGAACGTTCCCGACGGAGATGGCTACACTCCTTTAATGTTAGCAGCTAAGGGAGGCCACAAGGCGATGTGC CAATTCCTGATCGTATCGTGTGGTGCAGATTGCGAGTGGAAGAATGGCAGAGGTGAGACTGCGGTTTCTCTGGCTAGAGGAGGAGGAGTGGAAGATGTGA TCCTGGACGAGCTAGCTAGGAAGCTGGTGGTGAGAGGGTGTTATGTGAAGAAGCATACTAAGAGCGGGGCAGGTGTGGTTCATGGGAAGGAGATGAGAAT GGTTGCGGGGAAGGGAGTTTTGTCGTGGGGGAAGAGCAGCAGAAGGAATGTGGTGTGTCGAGATGCGGAGGTGGGAGGGAGTGGGGAGTTTAGGAAGAAG AGGGAGAGGAAAGGGAGAGACGGTGAGGATTCGGGTTTGTTTCGGGTTATGACGACGAAGAACAGAGAGGTGCATTTCGTGTGTGATGGAGGGAGGGAAA TGGCTGAGCTTTGGGTTAGAGGTATAAAGCTTGTTACAAGAGATGCTATCTGTTGTTGA
AA sequence Show only first row Show all	>Lus10022339 pacid=23139448 polypeptide=Lus10022339 locus=Lus10022339.g ID=Lus10022339.BGIv1.0 annot-version=v1.0 MTVFSGKQVVPVNYEAEVSQQLLEACLSSDLRSALDCISDPCLDVNFVGAVCLKSRRSEVVLRDESAGEVRVEYEEFKTDVTALFLAVHSGNVDLVRNLL SIGADVNQKLFRGFATTAAVREGHLEILEILLKAGASQPACEEALLEASCHGRARGTEVLMGSDLIRPHVAVHALVTASCRGFADVVDTLMKCGVDFNAT DRLLLLSSKPSLHTNVDCSALVAAVVTRQVDVVRMLLKAGAKTDVNVRLGAWSWDTTTGEEFRVGAGLADPYGITWCAVEYFESTGTVLRMLLQHYNFSP NNTHHGRTLLHYAILCGNEGAVRVLLGCGADVEAQVKTVKTVFRPIHMAARLALPAVLKLLIQSSCDLNSRTDSGDTALMICAKYRHEECLKVLAMAGAD FGLVNNAGQSALSIAATNRWFLGFQQAVLEAIKSGNVPVSSNVSVFCPLFFVSQAGDAEALQVLIKSTCMKEVVDLDYQDENGYSAVMFAALHGRVEAFR LLVQAGADVKLQNKSGETAISLSELNQNRDLFEKVMLDHALEKGNRSAGGFHALHCAARHGDIVAAKLLITSRGYDVNVPDGDGYTPLMLAAKGGHKAMC QFLIVSCGADCEWKNGRGETAVSLARGGGVEDVILDELARKLVVRGCYVKKHTKSGAGVVHGKEMRMVAGKGVLSWGKSSRRNVVCRDAEVGGSGEFRKK RERKGRDGEDSGLFRVMTTKNREVHFVCDGGREMAELWVRGIKLVTRDAICC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14230			unknown protein		Lus10022339 [exp]	0	1
AT5G14230			unknown protein		Lus10041588 [exp]	1.0	0.9054
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023337 [exp]	5.0	0.7996
					Lus10035120 [exp]	6.0	0.8175
AT4G13710			Pectin lyase-like superfamily ...		Lus10042509 [exp]	6.6	0.7641
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10033577 [exp]	7.3	0.7671
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	7.5	0.8146
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	9.2	0.8028
AT5G56510		APUM12	pumilio 12 (.1)		Lus10018710 [exp]	9.8	0.7051
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022045 [exp]	9.9	0.7479
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Lus10031017 [exp]	13.6	0.6876

Compare expression of checked genes

Lus10022339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.