Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14210 782 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 455 / 6e-149 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63410 367 / 2e-116 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 314 / 7e-96 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 290 / 6e-87 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 220 / 6e-60 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 192 / 9e-51 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G53890 181 / 6e-47 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G02220 168 / 6e-43 ATPSKR1 phytosulfokin receptor 1 (.1) AT2G26330 164 / 1e-41 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032058 [exp] 997 / 0 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 997 / 0 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 958 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041589 [exp] 807 / 0 AT5G14210 520 / 2e-176 Leucine-rich repeat protein kinase family protein (.1) Lus10020303 [exp] 415 / 1e-133 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10005689 [exp] 394 / 9e-126 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 369 / 3e-116 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 366 / 6e-115 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029659 [exp] 317 / 3e-98 AT5G63410 584 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333300 [exp] 922 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 744 / 0 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 725 / 0 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 471 / 3e-155 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 415 / 2e-133 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 401 / 1e-128 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 375 / 1e-118 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G139000 [exp] 203 / 4e-54 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 174 / 1e-44 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G220100 [exp] 172 / 3e-44 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10022340 pacid=23139357 polypeptide=Lus10022340 locus=Lus10022340.g ID=Lus10022340.BGIv1.0 annot-version=v1.0 ATGCCGAGCTTACTACTAAACTGTTCTTTTATTTTATTCCTTTCCTGGGTTTCCTTCCTTGTACCACTCTCCCATCAGCTGCAACCCTCCCAGACTCAGC TCCTAATGCAACTCAGGAAGCAATTGGAGTACCCTCCACTCTTGAACGTATGGGAAGAAAGCTACACCAGTAATGCTGACCTCTGCAACTTGCCATCCAC CCCACACTTGACCCTTGTCTGTGACAATAATCTGATCACGGAGCTCAAGATTATGGGAGACAACAACAAGAAGTTTCTCAAGGTCAGTGATTTCAACGGA TTCCCAGTTCCCAACCAGACTCTATCTCACCGTTTCTCTATTGATTCATTTGTTACAACTCTGACAAGGCTGACCAGCTTAAAAGCTTTGAGCTTTGTAT CCGTGGGGATTTGGGGTCAACTTCCTCATAAGATTCGTAGGCTGACTTCTCTTCAACTTCTGGACTTGAGTTCAAATTTCATTTTTGGTTCGATTCCACC TCAACTTTCGAGAATGGTCAAGCTGAATTCTTTGGTTCTTGATGGAAACTACTTCAATGGAACTGTCCCCGATTGGTTTGATTCGTTATCAAGCCTCACC ATTTTGAGCCTGAAGAACAACTCTTTTGAAGGTCACTTTCCTACTTCGATTTGCAGAATCAGAACCTTGACAGCTATTGCACTGTCCCACAATCGGCTGA CGGGTAAACTGCCTGATTTGGAGGCCTTGACTAATCTGCGTGTACTGGACTTGAGAGACAACAGATTGGAATCCGAGTTGCCTCTCATGCCAAAAGGGTT GGTTCATGTTCTCTTAAGCAATAACTCGTTTTCAGGTGAAGTTCCAGCGCAGTTTGGACGGTTGAGTCAGCTGCAACACCTGGATTTGTCGTTAAATAAC CTCAAAGGAACTCCTTCTTCTTCTTTGTTCTCTTTGCCAAGCATCAGTTATCTAAATTTGGCTTCCAATATGCTAAGTGGGTCGCTTCCTGTCTATCTCA GCTGTGGTTCCAAGCTTGGTTTTGTTGATATATCGATGAACAAGTTATTTGGTGGAATCCCAGCTTGTTTAGAGAGTAATTCAAGTAAGAGAGTGGTTAA ATCTGGTGGGAACTGTTTATCCGTTGATTCCTCAAATCAGCATCAAGAATCAGATTGCAAAGAGGCCACAGTGGATGCCAAAGGGTCAAGGTTTAGGGCA GCAGGGATACTTATTGCTGTCATTGGAGGAGCTCTAGTTTTGTTAGGGCTCTTAGCATTTGGGGTTTTCTTTGTTTGCAGAACATGTCGTCCTAGAAAAA CACTTGAGAATAATACAGTTTCCAAATCTGTTGAAGATAACGACCATCTACCACCTACTGCTGTTTCCTCTGAAGTCCTGGCCAATGCAACCAAGCTAGT GAGACAAGGTGCGTCATCATGCCATGTATTTCCCTTGGAGGAACTGAAGGAAGCCACAAACCACTTCAATTCCTCTTCATCCTTTATGGGTGAAGGCTCT ACCGGGAAGGTGTATAAAGGTAGATTGAAGAATGGAACCCTTGTGGCCATACGGTCCGTGACTTTGCTCAAGAAACAAACAACCCAAAACCTTAAAGTGA GGCTTGACCTGCTCTCAAAGCTTCATCATCCACATTTGGTTAGTTTGTTGGGTCACTGCATTTACAGCAGTGGACAAGACAATAGCGACAAGGTCTTCCT TGTCTACGAATATGTGCCTAATGGGAACTATCGTTCCTATTTATCAGAACACGTTGGTCAGAAGGCGCTAAGGTGGCCAGATAGGCTCGCCATTCTAATT GGTGTTGCCAAGGCTGTGCAGTTCCTGCATGCTGGTATGATTCTAGGCACATTCAATAACCGATTAAAGACGAACAACATATTGCTTGATGAACACAAGA TTGCAAAGCTAAGTGACTACGGCCTGCCCATTATCACTGAAGACTTCGACAAACTCGAGGCAAAGGGAGAGGGAACAAAGTTAAGCGACGGAATGAACTT AGAAGATGATGTGTACAGCTTCGGGTTTATACTACTCGAATCACTTGTCGGGCCTATAGTAACTGGGAAAGGGGAGACATTTATGCTCAATGAAATGGCA TCTTTTGGGAGCCAAGACGGGAGAAGAAGGGTTGTGGATCCAATTGTGCTAACCACATGCTCACAGGAGTCACTGTCAATGGTGGTGTCGATCACAAGCA AATGCATATCTCCGGAACCGTCAGAAAGGCCTTCGTTCGAAGATGTACTGTGGAACTTGCAGTATGCAGCTCAGGTTCAAGCCACAGCTGATGCTGACCA GAAATCTGACTCAACCTTATAG
AA sequence Show only first row Show all	>Lus10022340 pacid=23139357 polypeptide=Lus10022340 locus=Lus10022340.g ID=Lus10022340.BGIv1.0 annot-version=v1.0 MPSLLLNCSFILFLSWVSFLVPLSHQLQPSQTQLLMQLRKQLEYPPLLNVWEESYTSNADLCNLPSTPHLTLVCDNNLITELKIMGDNNKKFLKVSDFNG FPVPNQTLSHRFSIDSFVTTLTRLTSLKALSFVSVGIWGQLPHKIRRLTSLQLLDLSSNFIFGSIPPQLSRMVKLNSLVLDGNYFNGTVPDWFDSLSSLT ILSLKNNSFEGHFPTSICRIRTLTAIALSHNRLTGKLPDLEALTNLRVLDLRDNRLESELPLMPKGLVHVLLSNNSFSGEVPAQFGRLSQLQHLDLSLNN LKGTPSSSLFSLPSISYLNLASNMLSGSLPVYLSCGSKLGFVDISMNKLFGGIPACLESNSSKRVVKSGGNCLSVDSSNQHQESDCKEATVDAKGSRFRA AGILIAVIGGALVLLGLLAFGVFFVCRTCRPRKTLENNTVSKSVEDNDHLPPTAVSSEVLANATKLVRQGASSCHVFPLEELKEATNHFNSSSSFMGEGS TGKVYKGRLKNGTLVAIRSVTLLKKQTTQNLKVRLDLLSKLHHPHLVSLLGHCIYSSGQDNSDKVFLVYEYVPNGNYRSYLSEHVGQKALRWPDRLAILI GVAKAVQFLHAGMILGTFNNRLKTNNILLDEHKIAKLSDYGLPIITEDFDKLEAKGEGTKLSDGMNLEDDVYSFGFILLESLVGPIVTGKGETFMLNEMA SFGSQDGRRRVVDPIVLTTCSQESLSMVVSITSKCISPEPSERPSFEDVLWNLQYAAQVQATADADQKSDSTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14210			Leucine-rich repeat protein ki...		Lus10022340 [exp]	0	1
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	4.0	0.8131
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10038733 [exp]	5.1	0.7689
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	8.7	0.8364
AT1G55690			Sec14p-like phosphatidylinosit...		Lus10008360 [exp]	8.8	0.7850
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10012257 [exp]	10.1	0.7975
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10013393 [exp]	11.2	0.7707
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10011524 [exp]	12.0	0.8020
AT1G04500			CCT motif family protein (.1)		Lus10023727 [exp]	14.1	0.7887
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10023009 [exp]	16.3	0.7975
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10042669 [exp]	17.7	0.7746

Compare expression of checked genes

Lus10022340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.