Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01810 535 / 4e-175 unknown protein AT5G43230 439 / 2e-139 unknown protein AT2G42320 422 / 3e-135 nucleolar protein gar2-related (.1.2) AT3G57780 404 / 2e-128 unknown protein AT5G06930 353 / 2e-108 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041590 [exp] 1749 / 0 AT3G01810 603 / 0.0 unknown protein Lus10037001 [exp] 489 / 3e-156 AT3G01810 583 / 0.0 unknown protein Lus10040502 [exp] 432 / 3e-138 AT2G42320 685 / 0.0 nucleolar protein gar2-related (.1.2) Lus10011304 [exp] 431 / 9e-138 AT2G42320 688 / 0.0 nucleolar protein gar2-related (.1.2) Lus10015804 [exp] 327 / 1e-103 AT5G43230 371 / 2e-122 unknown protein Lus10015805 [exp] 130 / 4e-31 AT3G01810 160 / 5e-41 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333200 [exp] 1028 / 0 AT3G01810 652 / 0.0 unknown protein Potri.010G057700 [exp] 487 / 7e-158 AT5G43230 560 / 0.0 unknown protein Potri.008G177500 [exp] 483 / 1e-153 AT5G43230 565 / 0.0 unknown protein Potri.016G051500 [exp] 460 / 7e-148 AT2G42320 645 / 0.0 nucleolar protein gar2-related (.1.2) Potri.006G056800 [exp] 447 / 3e-143 AT2G42320 618 / 0.0 nucleolar protein gar2-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022341 pacid=23139367 polypeptide=Lus10022341 locus=Lus10022341.g ID=Lus10022341.BGIv1.0 annot-version=v1.0 ATGGTTCATCTAAATGCAAAGAACAAGAATAAGGCCTCAGTGCAGTTAAATTACTTAATCCACATTGAAGAGATCAAGCATTGGCCACCATCCCAATCTC TGAGGTCCCTTAGATCGGTTGTGATTCAGTGGGAAAATGGTGGCCGACATTCTGGCACTACCAATGCACTTGTTCCGACGCTTGGGACCGTAGTTGGTGA TGGGAAAATCACGTTTAATGAGTCTTTTAGATTACCAGTGACTTTGCTCAAATCATCCAAAGGAAGAGAGGGTGAAGTTTTTCAGAAGAATAACTTAGTG TTCAACTTGTGCGAACCTAGGAGGGATAAGGCTCAATTGCTTGCTACAGCTGTGATAGACCTGGCAGATTATGGCGTTCTCAAGGAGACTATAAGTGCTA CTGCTCCGATGAAAAGTACTAGGAGCTTTACAAACACTTCTCATCCTATTTTGCTCATTAAGATCCAGCCAGTTCCAAAGGGTCATCGCGGCTCTAAGGT GATGGATGGAGGCTTATCACGAGGTGTATCGTTGGATAAGAATGCTGATGATTCCGTGTCGGTATTGATGAATGAAGAATATGGTGAGGAAGCTGAGATT GCTTCCTTCACTGATGATGACGTTTCCTCTCAATGCTCCTTCATTAACGGGGGATTCCCTGCTTTTGAAAAGAATGGACCAGATCGAAGGACACATAGTA ATGGAGGGGCTGCTCAGGAACATGCAAATGCTTCACAGCCTATGCATGATAAAATTAAGAATCCTGAAGAATATGTCAAGGGCAATTCATCTCCTTCATC CTCTGTAGATCTATCTTCCAGTCCAGGCAGTCCAATAAATGGTCATGCTTTTCTGATGAAATCTCCTGATTCCGGTTCAGTCTTAAATCTGAGAAGTGAA AAAAGCCTTCAGCCAACTTCATCTAGCGTTACATATGATGAAGTTGAGGAATATGGTGAAAGTCGAAGCAATAACAACAGAGATGTGGAGCACATTGATG GTGTGGAATGTGAAATAACTGAGAGCCTTGTGGTGAATAGACAGCCTGTCATAACCAAGGATGAGAACTCCACTTCTGTGAAAGAAGTGAATGGCGGAGA ATACCAAACGTTTGAACAAATCAGTAAAAGTATAGATGAAACAACGGATTCCTCCCAGGAAGATCCTACTAGCTCATCTTTTCTTCAAGCTACTCCTAAC AAAGGAGCATCACTTGGCAGCGAAGACACTGAAATGAAGGGAAATATTGTGAAATCTGATAGACTAAAGCATGTGAAATCTGTTAGGTCGATGTCAGACT CGTTCCGGAGCAATGGAGGTGTTAGCATAAGTCACCATGAACCCAAAGAGGTCAATGTGTGGGGTGATCAACAGAGCAGCGCTGGAAGCATTAGAGCTGG TGAAAGGAGAAGTGCCAAGATTCATCCCAAGGACAGCAGCACAATGTTAGATGGAAAGTTCCAGCAATTGGCCCACAAAGTTAAGATGCTTGAAGGAGAG CTGAGAGAAGCTGCTGCCATTGAGACTGCACTTTACTCTGTTGTTGCTGAGCATGGAAGTTCCATTAGTAAGGTGCATGCACCGGCTAGGCGCCTCTCGA GAATGTATCTTCATGTGTCTGGAGAAGATTCATACGCAAGCAGAGCCAGTGCCGCTAGAAGTGCGGTATCGGGACTTGTTCTAGTGGCAAAGTCATGTGG CAACGATGTCCCTAGATTGACATTTTGGTTGTCCAACTGTGTTGTGCTAAGAGCTATCATAAGCCAAGCAGCCGGTGAGTCTCTGGAAAGTAAAGGTGAT CAAATGAGGAACCTCCCATTGAACTGGAAGGAATTATCTTCTAGCAGAAAAGAAAAGGGAAGTGGTAATTCTGGTGATTGGGAGAACCCATGTACATTTA TAACTGCACTGGAAAGAGTTGAAGCTTGGATCTTTTCTAAAACTGTTGAATCTATTTGGTGGCAGACTCTTACTCCACACATGCAATCTGCTGTCACAAA AGGCATTGATGGAGTAATTGATTCAGACTCTAAGAAAACCCTTGGGAGGACCTCAAGTTCATGCTATCAAGTCCAAGGAAACTTCTCCTTAGAGCTCTGG AAGAATGCATTCAAGGATGCCTGTGAAAGACTCTGCCCAGTTCGAGCGAGTGGACACGAGTGTGGTTGTTTGTCCGAGCTGGCAAGGCTGGTGATGGAGC AATGTGTGGCTCGATTAGATGTGGCAATGTTTAATGCGATACTCCGTGAATCTGCTGATGAAATCCCCACTGATCCAGTATCTGATCCCATTAGTGACCC AATGGTTCTTCCAATTCCAGCTGGGATATCAAGTTTTGGAGCTGGAGCACAGCTTAAAAATGCGATTGGGAACTGGTCAAGATGGCTGACTGACTTATTT GGGCTGGACGATGATGATGATGATCCCGGCGAGGGAAGCAGTGACCCTGATGAGGATGATCACAGACAAGATACTTCCTTCAAATCTTTTTATCTCCTTA ATGCACTGAGTGATCTTATGATGCTTCCCAAAGACTTGCTCTTAAGTAGAACTATAAGGAAAGAGGTGTGTCCTACATTTGGGACGCCATTGATCAAGAG GATTCTCTATAGTTTCGTCTCAGACGAGTTTTGCCCTGATCCTGTACCAAATGTCGTCCTTAAAGCGTTAGAGTCCGAGGGCAACACGGTAGGAGAAGAC GGGTGTGTCACAACTGTACCATGCATCGCCGCTTCTCCAGTGTACATACCTCCTTCATCACCTTCTGTTGCCGGCACAATTGGAGTGTACGGGTCCGAAT CGCAACTCCGGAAAAGTAGGTCATCTGTGTTGAAAAAGTCATACACCAGTGACGACGAGCTTGATGAGCTGAAATCACCTCTGGCGTCAATATTCCCTGA TGCATACCTTTCATCGCCTGGAGCAATGCAGCCAGCATGGAAAATCAAAGAGGAAGGCCAAAACCCTGTCAGATACGACCTTCTTAAGAATATATGGAGA AACAGTTGA
AA sequence Show only first row Show all	>Lus10022341 pacid=23139367 polypeptide=Lus10022341 locus=Lus10022341.g ID=Lus10022341.BGIv1.0 annot-version=v1.0 MVHLNAKNKNKASVQLNYLIHIEEIKHWPPSQSLRSLRSVVIQWENGGRHSGTTNALVPTLGTVVGDGKITFNESFRLPVTLLKSSKGREGEVFQKNNLV FNLCEPRRDKAQLLATAVIDLADYGVLKETISATAPMKSTRSFTNTSHPILLIKIQPVPKGHRGSKVMDGGLSRGVSLDKNADDSVSVLMNEEYGEEAEI ASFTDDDVSSQCSFINGGFPAFEKNGPDRRTHSNGGAAQEHANASQPMHDKIKNPEEYVKGNSSPSSSVDLSSSPGSPINGHAFLMKSPDSGSVLNLRSE KSLQPTSSSVTYDEVEEYGESRSNNNRDVEHIDGVECEITESLVVNRQPVITKDENSTSVKEVNGGEYQTFEQISKSIDETTDSSQEDPTSSSFLQATPN KGASLGSEDTEMKGNIVKSDRLKHVKSVRSMSDSFRSNGGVSISHHEPKEVNVWGDQQSSAGSIRAGERRSAKIHPKDSSTMLDGKFQQLAHKVKMLEGE LREAAAIETALYSVVAEHGSSISKVHAPARRLSRMYLHVSGEDSYASRASAARSAVSGLVLVAKSCGNDVPRLTFWLSNCVVLRAIISQAAGESLESKGD QMRNLPLNWKELSSSRKEKGSGNSGDWENPCTFITALERVEAWIFSKTVESIWWQTLTPHMQSAVTKGIDGVIDSDSKKTLGRTSSSCYQVQGNFSLELW KNAFKDACERLCPVRASGHECGCLSELARLVMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDPMVLPIPAGISSFGAGAQLKNAIGNWSRWLTDLF GLDDDDDDPGEGSSDPDEDDHRQDTSFKSFYLLNALSDLMMLPKDLLLSRTIRKEVCPTFGTPLIKRILYSFVSDEFCPDPVPNVVLKALESEGNTVGED GCVTTVPCIAASPVYIPPSSPSVAGTIGVYGSESQLRKSRSSVLKKSYTSDDELDELKSPLASIFPDAYLSSPGAMQPAWKIKEEGQNPVRYDLLKNIWR NS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01810			unknown protein		Lus10022341 [exp]	0	1
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	2.0	0.9078
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	3.2	0.8736
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003525 [exp]	6.0	0.8886
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10041798 [exp]	6.5	0.8720
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	8.3	0.8865
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	8.9	0.8330
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	10.6	0.8676
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038111 [exp]	11.5	0.8755
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	12.0	0.8589
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Lus10013189 [exp]	12.0	0.8271

Compare expression of checked genes

Lus10022341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.