Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01820 234 / 4e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37250 155 / 7e-46 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 140 / 9e-40 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25280 69 / 1e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G50370 67 / 6e-13 Adenylate kinase family protein (.1) AT3G60180 65 / 2e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G63400 65 / 2e-12 ADK1 adenylate kinase 1 (.1.2) AT5G26667 55 / 5e-09 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G35170 57 / 6e-09 adenylate kinase family protein (.1.2) AT3G60961 46 / 4e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032057 [exp] 317 / 3e-109 AT3G01820 244 / 5e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035224 [exp] 312 / 2e-107 AT3G01820 242 / 3e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040358 [exp] 158 / 9e-47 AT2G37250 405 / 1e-143 adenosine kinase (.1) Lus10023476 [exp] 158 / 1e-46 AT2G37250 407 / 2e-144 adenosine kinase (.1) Lus10030296 [exp] 157 / 2e-46 AT2G37250 395 / 1e-139 adenosine kinase (.1) Lus10001984 [exp] 155 / 1e-45 AT2G37250 391 / 4e-138 adenosine kinase (.1) Lus10031714 [exp] 67 / 3e-12 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031135 [exp] 64 / 8e-12 AT4G25280 263 / 3e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036326 [exp] 64 / 3e-11 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333100 [exp] 267 / 1e-89 AT3G01820 249 / 8e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G093200 [exp] 223 / 2e-72 AT3G01820 227 / 3e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G215300 [exp] 162 / 2e-48 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.008G046100 [exp] 153 / 5e-45 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.012G095700 [exp] 98 / 1e-25 AT3G01820 90 / 8e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G095300 [exp] 65 / 3e-12 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.015G129000 [exp] 62 / 3e-11 AT4G25280 301 / 6e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G092800 [exp] 59 / 3e-10 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.018G113400 [exp] 59 / 9e-10 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.002G134600 [exp] 54 / 9e-09 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase
Representative CDS sequence Show only first row Show all	>Lus10022342 pacid=23139434 polypeptide=Lus10022342 locus=Lus10022342.g ID=Lus10022342.BGIv1.0 annot-version=v1.0 ATGGCTGGTCTGAGTCGGGTGCGATTCGCTGCAGCCCCGTCGGCGCTCCGCCGCCTCGGATTGCTTGCCGGCCGCCGAGCTTACGGATCAGCGGCTGCAG TTGAGTACAATTACTACGACGATGAAGATGAAGAGCGTTCCCATTACTCCGCACCGAGTGCTTCCCCTTCGCCAGGGAGCCTGGCGTCGGCGGCGGGGTT GACGTCTGAGAGAGGAGTTCAGTGGGTGTTGATTGGAGATCCGGGAGTGAAGAAACACCGGTACGCAGAGAAACTCTCCAAAGTTCTACAAGTCCCTCAC ATTTCCATGGGCACTCTCCTTCGGCAGGAGCTTAACCCTAGCTCTGCTCTTTACAAACAGATATTCAGTATAGTGAATGAAGGGAAGCTGGTACCCGAAG AGGTCATATTTGGGCTGTTGACAAAGAGGCTTGAAGAGGGATACTCTAAAGGGGAAAGTGGCTTCATTTTGGACGGAATTCCCAGAACTAGATTGCAGGC TGAGATTCTTGATGAAATTGCTGACATTGATTTGGTGGTGAACTTCAAATCTGCTGAACAAGGTCTGGTGAAAAGCAACTATGCCAGTGTAGGACATTCT CCATCAGCTACTGGTTTGGGAAGATCCTATGAAGAGAAGTTCCGCGTATATGCAGAAGAGGGGAAGGCAGTGGAAAATTACTACAGGAAGCAGAGAAAGC TTCTTGATTTTCAGGTGGCAGACGGACCAGGAGGAGATGCCTGGCAAGGCTTGTTGGCTGCTTTGCATCTCAAGAATGCAAGTGCACTGCTTTCTTCAAA TGAAGTTGCTGCTTGA
AA sequence Show only first row Show all	>Lus10022342 pacid=23139434 polypeptide=Lus10022342 locus=Lus10022342.g ID=Lus10022342.BGIv1.0 annot-version=v1.0 MAGLSRVRFAAAPSALRRLGLLAGRRAYGSAAAVEYNYYDDEDEERSHYSAPSASPSPGSLASAAGLTSERGVQWVLIGDPGVKKHRYAEKLSKVLQVPH ISMGTLLRQELNPSSALYKQIFSIVNEGKLVPEEVIFGLLTKRLEEGYSKGESGFILDGIPRTRLQAEILDEIADIDLVVNFKSAEQGLVKSNYASVGHS PSATGLGRSYEEKFRVYAEEGKAVENYYRKQRKLLDFQVADGPGGDAWQGLLAALHLKNASALLSSNEVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01820			P-loop containing nucleoside t...		Lus10022342 [exp]	0	1
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10038679 [exp]	1.7	0.7712
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Lus10009387 [exp]	6.0	0.7520
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	16.0	0.7472
AT3G18550	TCP	AtBRC1, ATTCP18...	BRANCHED 1, TCP family transcr...		Lus10021713 [exp]	44.4	0.6778
AT4G26430		CSN6B	COP9 signalosome subunit 6B (....		Lus10025606 [exp]	49.5	0.6852
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10041344 [exp]	56.7	0.6610
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10015821 [exp]	60.6	0.6822
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Lus10009759 [exp]	61.7	0.6682
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10009967 [exp]	81.8	0.6155
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	98.5	0.6636

Compare expression of checked genes

Lus10022342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.