Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76650 132 / 6e-40 CML38 calmodulin-like 38 (.1.2.3) AT3G01830 128 / 1e-38 Calcium-binding EF-hand family protein (.1.2) AT1G76640 121 / 8e-36 Calcium-binding EF-hand family protein (.1) AT3G50770 110 / 3e-31 CML41 calmodulin-like 41 (.1) AT5G42380 108 / 1e-30 CML39, CML37 CALMODULIN LIKE 39, calmodulin like 37 (.1) AT1G66400 94 / 4e-25 CML23 calmodulin like 23 (.1) AT5G37770 91 / 8e-24 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G24620 91 / 2e-23 EF hand calcium-binding protein family (.1) AT1G73630 88 / 1e-22 EF hand calcium-binding protein family (.1) AT1G18210 88 / 1e-22 Calcium-binding EF-hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032734 [exp] 130 / 1e-38 AT3G50770 153 / 5e-47 calmodulin-like 41 (.1) Lus10018845 [exp] 125 / 4e-34 AT3G12340 114 / 3e-29 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10028913 [exp] 91 / 1e-23 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10031345 [exp] 90 / 2e-23 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10004330 [exp] 89 / 4e-23 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10009059 [exp] 89 / 1e-22 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 90 / 2e-22 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10018012 [exp] 84 / 5e-21 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10027701 [exp] 84 / 2e-20 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G332900 [exp] 154 / 8e-49 AT1G76650 115 / 2e-33 calmodulin-like 38 (.1.2.3) Potri.005G259900 [exp] 145 / 8e-45 AT1G76650 156 / 2e-48 calmodulin-like 38 (.1.2.3) Potri.002G001400 [exp] 138 / 4e-42 AT5G42380 160 / 6e-50 CALMODULIN LIKE 39, calmodulin like 37 (.1) Potri.002G132500 [exp] 134 / 3e-41 AT5G42380 98 / 1e-26 CALMODULIN LIKE 39, calmodulin like 37 (.1) Potri.015G093800 [exp] 134 / 3e-41 AT1G76650 101 / 8e-28 calmodulin-like 38 (.1.2.3) Potri.005G128100 [exp] 116 / 2e-33 AT3G50770 188 / 7e-61 calmodulin-like 41 (.1) Potri.007G031900 [exp] 114 / 8e-33 AT3G50770 147 / 1e-44 calmodulin-like 41 (.1) Potri.010G107100 [exp] 96 / 3e-25 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 94 / 1e-24 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.012G048200 [exp] 92 / 4e-24 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10022343 pacid=23139374 polypeptide=Lus10022343 locus=Lus10022343.g ID=Lus10022343.BGIv1.0 annot-version=v1.0 ATGGTGGCTATGAAGGAGCTGATCATGGATAAGCAGGAGCAGTACAAGCGTGTGTTCGCGGACTTCGACTCAGACGGGGACGGCAAGATATCCTGCTCCG AGCTACGTCTGTGCGTCGGAGGCGATTCGCTCACGGAGGAGGAAGCGGAGGCGGCGGTTAGGTTCTCGGACTCCGACGGCGACGGGATGCTCGATTTGGA GGACTTCGTGAGACTGGTGGAGGCAGGGGATGAGGAGGAGAAGGTCCAGGATTTAAGGGAGGCCTTCAAGATGTACGCCGCGGCGGAAAACGGTAAAATG ATAACGCCGAAAAGCTTGAAGAGGATGTTGAGCCGGCTTGGGATGCGGCGGAGCACGGCGGAGTGCGGAGTGATGATTGCGGAGTTCGATGTCAATGGGG ATGGTGTTTTGGATTTCGACGAGTTTAAGGTCATGATGTCTTGA
AA sequence Show only first row Show all	>Lus10022343 pacid=23139374 polypeptide=Lus10022343 locus=Lus10022343.g ID=Lus10022343.BGIv1.0 annot-version=v1.0 MVAMKELIMDKQEQYKRVFADFDSDGDGKISCSELRLCVGGDSLTEEEAEAAVRFSDSDGDGMLDLEDFVRLVEAGDEEEKVQDLREAFKMYAAAENGKM ITPKSLKRMLSRLGMRRSTAECGVMIAEFDVNGDGVLDFDEFKVMMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	2.2	0.9331
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	2.4	0.9312
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031473 [exp]	4.6	0.9304
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	5.7	0.8967
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	6.0	0.8797
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	6.3	0.9141
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10031471 [exp]	6.6	0.9153
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	6.9	0.9061
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	7.3	0.9039
AT4G36500			unknown protein		Lus10014291 [exp]	7.5	0.9086

Compare expression of checked genes

Lus10022343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.