Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74250 191 / 5e-56 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39960 49 / 2e-06 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G28210 46 / 2e-05 ATJ1 DNAJ heat shock family protein (.1.2) AT3G12170 45 / 3e-05 Chaperone DnaJ-domain superfamily protein (.1) AT1G24120 45 / 6e-05 ARL1 ARG1-like 1 (.1) AT1G80030 45 / 6e-05 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT1G59980 44 / 7e-05 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT2G22360 44 / 7e-05 DNAJ heat shock family protein (.1) AT1G21080 44 / 8e-05 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT2G33735 42 / 9e-05 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012524 [exp] 336 / 2e-114 AT1G74250 142 / 3e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10034688 [exp] 212 / 5e-64 AT1G74250 468 / 5e-158 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10017846 [exp] 202 / 3e-60 AT1G74250 464 / 1e-156 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10026920 [exp] 47 / 1e-05 AT5G06110 681 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020685 [exp] 45 / 1e-05 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10020118 [exp] 47 / 2e-05 AT5G06110 749 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10029862 [exp] 45 / 2e-05 AT1G56300 201 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Lus10020117 [exp] 46 / 3e-05 AT5G06110 736 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10026919 [exp] 45 / 4e-05 AT5G06110 752 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G018400 [exp] 187 / 6e-55 AT1G74250 460 / 2e-155 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 47 / 6e-06 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G260400 [exp] 46 / 2e-05 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.005G160200 [exp] 46 / 2e-05 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.005G113100 [exp] 44 / 3e-05 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G103900 [exp] 44 / 3e-05 AT2G33735 147 / 2e-46 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G000300 [exp] 45 / 4e-05 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.009G015700 [exp] 45 / 4e-05 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G193500 [exp] 45 / 5e-05 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.008G018800 [exp] 45 / 5e-05 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10022344 pacid=23139382 polypeptide=Lus10022344 locus=Lus10022344.g ID=Lus10022344.BGIv1.0 annot-version=v1.0 ATGGCGAGGAAGCGATGCTTGTACTCGGTACTGGGAATATCTCCAGACGCAATCCGCGACGAAATACACTCTTCTTACAGTCGGCTGTGTCACCAGCGCG ATGTATTCGACGCAGATGAGTTCCAGGAGCTGCTTCACGCTTTCAGGATCCTATCCGATCCAATGAAGCGTGCCCAGTACGATTCTGTCCGGCCTAAGGA TCTAATTTCCCCCTCCGGCCCAAGTATTCCCTATCTATCCTCCTTCATGTGGGAGAAGATTGTATTCTCTGATTACTCTGATGAGGGAGCAGGATTTTAT AAAGTATATTCCGACTTGTTCAATTATATTTACTGGAGCGAGTGGAGTTTTTGTAAGAAATCAGGGTTTGGGGTTGATCATTTAAAGGTAGCGCCACCGA TGGGGAATTTGGAGAGCCCGTACGCGCAGGTGACTGCTTTTTACAGTTATTGGTTGGGGTTTTCGTCGGTGATGGATTTTTGTTGGGTGGATCCTGCTTA CAATCTTATGGTTATGGTTGTTCAAAGCAACTACTTTGAACGGCAGATGGAGGGGGCTAATGTGAAAAAGAGGGAGAGGGCAAGGACCGAGTTTAACCAG ACCGTAAGAGGGTTGGCTAAGTTTGTCCATAAGATGGATAAGAGAGTGAAGAAGAAGGATAAGGAGAAGCTGGAGAAGCGGGAGAAGGAGACTAAGAAGA AGCTGGAGATGAGGGAGAAGAAGAAGAAGATGATGGTTAAAGCCTCTCAAGAACCAACAGATTGTGGTTTTGCGCAGTCTAAGAATCACAAGGAGATTGT CGCACATTTGCAGGGGGAGGAATGTTACGCCATGGGCTGCTGTATGGGCTTCATGTTTCGTAAAACCTCTATTATCTTTATGTTCGTTAGCTGCTTCGGT TTATTTAGCAAGTGA
AA sequence Show only first row Show all	>Lus10022344 pacid=23139382 polypeptide=Lus10022344 locus=Lus10022344.g ID=Lus10022344.BGIv1.0 annot-version=v1.0 MARKRCLYSVLGISPDAIRDEIHSSYSRLCHQRDVFDADEFQELLHAFRILSDPMKRAQYDSVRPKDLISPSGPSIPYLSSFMWEKIVFSDYSDEGAGFY KVYSDLFNYIYWSEWSFCKKSGFGVDHLKVAPPMGNLESPYAQVTAFYSYWLGFSSVMDFCWVDPAYNLMVMVVQSNYFERQMEGANVKKRERARTEFNQ TVRGLAKFVHKMDKRVKKKDKEKLEKREKETKKKLEMREKKKKMMVKASQEPTDCGFAQSKNHKEIVAHLQGEECYAMGCCMGFMFRKTSIIFMFVSCFG LFSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10022344 [exp]	0	1
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10012524 [exp]	1.0	0.9425
					Lus10005901 [exp]	3.2	0.8849
AT3G49220			Plant invertase/pectin methyle...		Lus10018103 [exp]	4.6	0.8268
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	5.5	0.8214
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	9.5	0.8480
AT5G53110			RING/U-box superfamily protein...		Lus10019018 [exp]	11.6	0.8169
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10006825 [exp]	15.9	0.8407
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10003942 [exp]	21.1	0.8397
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	22.4	0.8296
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10022373 [exp]	24.5	0.8058

Compare expression of checked genes

Lus10022344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.