Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01840 388 / 4e-126 Protein kinase superfamily protein (.1) AT2G33580 197 / 2e-54 Protein kinase superfamily protein (.1) AT3G21630 163 / 1e-42 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT2G23770 151 / 2e-38 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT5G49760 151 / 7e-38 Leucine-rich repeat protein kinase family protein (.1) AT4G02010 150 / 7e-38 Protein kinase superfamily protein (.1) AT1G51940 149 / 1e-37 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT5G49770 147 / 2e-36 Leucine-rich repeat protein kinase family protein (.1) AT2G28250 144 / 3e-36 NCRK Protein kinase superfamily protein (.1.2) AT1G20650 140 / 4e-36 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041574 [exp] 995 / 0 AT3G01840 383 / 1e-124 Protein kinase superfamily protein (.1) Lus10016793 [exp] 216 / 3e-61 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10022487 [exp] 218 / 1e-59 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008586 [exp] 189 / 3e-51 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10019662 [exp] 171 / 8e-47 AT2G33580 198 / 3e-57 Protein kinase superfamily protein (.1) Lus10019661 [exp] 175 / 2e-46 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10030022 [exp] 172 / 5e-46 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10021889 [exp] 171 / 1e-45 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10035301 [exp] 169 / 7e-45 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G332800 [exp] 575 / 0 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.008G160600 [exp] 224 / 4e-64 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.005G259600 [exp] 201 / 1e-55 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128401 [exp] 177 / 2e-50 AT2G33580 196 / 1e-57 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 179 / 7e-48 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 176 / 3e-47 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.010G078700 [exp] 173 / 5e-46 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 172 / 6e-46 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 173 / 1e-45 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G226600 [exp] 169 / 9e-45 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10022345 pacid=23139419 polypeptide=Lus10022345 locus=Lus10022345.g ID=Lus10022345.BGIv1.0 annot-version=v1.0 ATGGGCACGGCAGCTCTTCTTTTGTCTTCTTCCCTTGTCATCATAATATTAACATCTACAATCCCTTCTTCCCTTGCACACAACAACAACTTGTTCAGCT GCGATTCATCAATTCCTCCTACTACAGGTTTCAACACCTGCAATTTCCCCACTTCCACTTGCAACACATTTGCTCTTCTTCACACCAATCCTCCTCACTT CTCCTCCCTCTCAAACCTAGCCTCTTACCTCAATCTCGACCGTCTATCCATTGCTCAAGCCAATGGCCTCCCTCCCAAAACAGATTCCCTCCCCATCGAT CATCAACCTCTACTGATTCCCTTGACCTGCAAATGTAACAGTGGGGTTTTCGCTGCTCAGCTTGTGGTCGAGACTGCCGTTAAAGGTGACACCTTTTCCT CCATTTCTCAGTCTCTCCAAGGACTCACCACCTGCAACCAAATAAAAACCCTAAACCCTAATTTGGACTCCACTCCCAATCTTGCCCCAATCTTGGTCCC TTTGAAATGCGCTTGTCCTGAAGAACCAGCGAAAGCTAGAATCTTTCTCACGTACCCTGTGATTCCAGGAGATTCGCTATCTACCCTTTCAACCAGATTC AACGTTTCCCCGGAATCCATCGTTTCGGCGAATACCCACCCGTTGAATCTCCAGCCTTTCACTTCTCTTTTCATCCCGCTAAACGCCACCAAGCCTCCAA CTTTTATCATAATACGGCATCGTTTCCGGCACCCGGAGATGCGGAGGAAAGTTGGCATCTACATTGCTGTTATCTGTGGGGTTATCGTGGGGAGCATTGC CATAGCGGCAGCTTTCTTCCTTGCGATAATGCTGCTTAAGAAGAACAAGAATAAGAAGACGAAATTACCCCCACAGAAACAGAGGAAGAAACAGAGCATT TCCAACAAAGATGCAGACTTGGAACTCCAGCAGCTCAGCTTGAGCGTCAGAACCACCAGCGACAAGAAAGTATCGTTCGAGAGTTCGCAGCAGGACAGTC TTGATGTTCCGGCGACGACGCCTCGAAAGGGGATGGTGATTCTGGAGAGCTATACGGTGGAGGAGCTGACAAGGGCTACAGAAGATTTCAATTCAAGTAA TCTGATTGAAGGAAATGTGTATCACAGCCGGCTCAACGGGAAGAACATGGCAATCAAGAGATTGAACAAGACGGATTTGGTTTCGAAGATCGATTTCGAG ATCTTGAGCATTCCAACACACCACCATCATCCTAAGATCCTCAGGCTTCTAGGTACTTGTCTGAATGAAGGAGAGTCTGAAAAAGTTCCATCATACTTAG TGTTTGAGTATGCGAAAAACGGGTCCTTGAGGGATTGGTTACTCGGTGGATTGGCGATGAAGAACCAATTCATCGCGTCATGTTATTGTTTCTTGACATG GAATCAGAGGCTGAAGATATGCCTTGATGTGGCAGTAGGGTTGCAGTATATGCACCTTATCATGAGTCCGAGCTATGTCCATAGGAATCTAAGGACCAGG AACATCTTCTTGGATGAAGAGTTCAATGCTAAGATCGGGAACTTCGCAATGGCGAAATTGGTCGAAGATGATGATTGTAATGACAAATCGAAAGACACAG GCTATCTAGCTCCTGAGTATGTAAAAAATGCCATAGTGTCTCCAAGTGTGGACATATATGCATACGGTGTCGTTCTGATGGAGGTTTTGTCAGGCAAAAC TGCAGCAACTGATAGTGGGAATGCAGGGAAACTTCATGAGAATATCAAGGGGATGTTGGCATCTGAGGATGCAAAGGAGCTTAAGGATTGGATGGATAGT GCATTAGGTGATAACTATCCATTGGATGGAGCAGTAGCTTTGGCCAACCTGGCGCGTACATGTGTCGAGGAAGAGCCTTGTTCGAGGCCAAGTGCTGGGG ATATAGTGGAGAAGCTGTCTGAATTGGTGGAGGAATTAAGTGTTATGGGACAAGGAGGAGCAGAGAGTAATAATATGTCTTTGTGTGAGAGTTCTTGTAA GCCTCTGGTGAAAAACGCTGCAGAAAGTATGAGGTGA
AA sequence Show only first row Show all	>Lus10022345 pacid=23139419 polypeptide=Lus10022345 locus=Lus10022345.g ID=Lus10022345.BGIv1.0 annot-version=v1.0 MGTAALLLSSSLVIIILTSTIPSSLAHNNNLFSCDSSIPPTTGFNTCNFPTSTCNTFALLHTNPPHFSSLSNLASYLNLDRLSIAQANGLPPKTDSLPID HQPLLIPLTCKCNSGVFAAQLVVETAVKGDTFSSISQSLQGLTTCNQIKTLNPNLDSTPNLAPILVPLKCACPEEPAKARIFLTYPVIPGDSLSTLSTRF NVSPESIVSANTHPLNLQPFTSLFIPLNATKPPTFIIIRHRFRHPEMRRKVGIYIAVICGVIVGSIAIAAAFFLAIMLLKKNKNKKTKLPPQKQRKKQSI SNKDADLELQQLSLSVRTTSDKKVSFESSQQDSLDVPATTPRKGMVILESYTVEELTRATEDFNSSNLIEGNVYHSRLNGKNMAIKRLNKTDLVSKIDFE ILSIPTHHHHPKILRLLGTCLNEGESEKVPSYLVFEYAKNGSLRDWLLGGLAMKNQFIASCYCFLTWNQRLKICLDVAVGLQYMHLIMSPSYVHRNLRTR NIFLDEEFNAKIGNFAMAKLVEDDDCNDKSKDTGYLAPEYVKNAIVSPSVDIYAYGVVLMEVLSGKTAATDSGNAGKLHENIKGMLASEDAKELKDWMDS ALGDNYPLDGAVALANLARTCVEEEPCSRPSAGDIVEKLSELVEELSVMGQGGAESNNMSLCESSCKPLVKNAAESMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01840			Protein kinase superfamily pro...		Lus10022345 [exp]	0	1
AT3G03130			unknown protein		Lus10009977 [exp]	4.4	0.9431
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	6.9	0.9360
AT1G10780			F-box/RNI-like superfamily pro...		Lus10001614 [exp]	7.2	0.9333
AT3G12870			unknown protein		Lus10031776 [exp]	8.3	0.9346
AT3G12870			unknown protein		Lus10031198 [exp]	9.7	0.9319
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	11.0	0.9290
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10017534 [exp]	11.8	0.9287
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	12.6	0.9155
AT1G63100	GRAS		GRAS family transcription fact...		Lus10029592 [exp]	18.5	0.9156
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	18.7	0.9246

Compare expression of checked genes

Lus10022345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.